PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
avicennia_marina_AM_01124 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_03428 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_03692 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_03792 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_04055 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_04903 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_05231 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_05838 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_05974 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_08627 Phenylpropanoid CSE low borderline CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_11079 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_16696 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_17400 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_19496 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_20112 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_21527 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
avicennia_marina_AM_22097 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_24337 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_24409 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_24952 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_25461 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_28459 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_28748 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
avicennia_marina_AM_30748 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL