PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
avicennia_marina_AM_17626 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_17627 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_17867 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_18346 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_18347 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_19123 Steroid DWF4/CYP90B1 medium borderline
avicennia_marina_AM_19692 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_19742 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_20000 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_20484 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_21470 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_22187 Steroid DWF4/CYP90B1 medium borderline
avicennia_marina_AM_23052 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_23053 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_23055 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_23102 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_23103 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_23855 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_25246 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_25379 Steroid DWF4/CYP90B1 medium borderline
avicennia_marina_AM_25442 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_25443 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_25444 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_25514 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_26140 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_28161 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_28162 Steroid DWF4/CYP90B1 medium borderline
avicennia_marina_AM_28289 Steroid DWF4/CYP90B1 medium borderline
avicennia_marina_AM_28295 Steroid DWF4/CYP90B1 medium borderline
avicennia_marina_AM_28513 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_29681 Steroid DWF4/CYP90B1 medium borderline
avicennia_marina_AM_29743 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_31349 Steroid DWF4/CYP90B1 medium borderline
avicennia_marina_AM_31892 Steroid DWF4/CYP90B1 low borderline
avicennia_marina_AM_32973 Steroid DWF4/CYP90B1 medium borderline