Avicennia marina (avicennia_marina)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 29.22% Alkaloid pathway 22.04% Phenylpropanoid pathway 20.07% Flavonoid pathway 14.43% Rosmarinic acid pathway 9.21% Steroid pathway 5.03%

Family Distribution

1629 Candidate Genes

BAHD 5.81% C3'H/CYP98A 5.66% C4H 5.46% UGT 4.76% 4CL 4.74% 7DLGT 4.31% UFGT 4.16% IFS 3.98%

Other Families 61.11%

More Families (97)

CYP76 146 3.66% POD 139 3.48% T3O 137 3.43% F3H 106 2.66% DWF4/CYP90B1 85 2.13% NMT 79 1.98% CAD 76 1.9% F3'H/CYP75B 72 1.8% CODM/T6ODM 68 1.7% BR6OX2/CYP85A2 61 1.53% STR 56 1.4% SMT1/SMT2/SMT3 53 1.33% H6H 50 1.25% LAC 45 1.13% IFR 44 1.1% TRI/TRII 43 1.08% GS 43 1.08% HCT 43 1.08% CYP71 43 1.08% RAS 42 1.05% CAS 42 1.05% CYP90D1 40 1.0% PMT 38 0.95% PYKS 37 0.93% ANR 36 0.9% IO 32 0.8% T16H 31 0.78% TPS 31 0.78% G8O/G8H 30 0.75% SGD 29 0.73% GES 28 0.7% NCS 27 0.68% COMT 27 0.68% SLS 25 0.63% 8HGO 24 0.6% CSE 24 0.6% CPD/CYP90A1 24 0.6% FNS 21 0.53% TAT 21 0.53% CCR 20 0.5% CYP51G1 18 0.45% ANS/LDOX 17 0.43% F3'5'H/CYP75A 16 0.4% FPPS 16 0.4% GGPPS 16 0.4% CNMT 15 0.38% 7DLH 15 0.38% PAL 15 0.38% AACT 14 0.35% HPPR 13 0.33% BR6OX1/CYP85A1 13 0.33% COR 12 0.3% CHS 12 0.3% ROT3/CYP90C1 12 0.3% DFR 11 0.28% 16OMT 10 0.25% LAMT 10 0.25% F5H/CYP84A 10 0.25% MPO 9 0.23% CCoAOMT 9 0.23% CPR 9 0.23% 6OMT_4OMT_SOMT 8 0.2% CYP80B1 8 0.2% SQS/FDFT1 8 0.2% SQE 8 0.2% ISY 7 0.18% ADC 7 0.18% HMGR 7 0.18% DXS 7 0.18% TYDC_DDC 6 0.15% FLS 6 0.15% SMO1/SMO2 6 0.15% MVD 6 0.15% MVK 6 0.15% TDC 5 0.13% CYP719 5 0.13% MCT/IspD 5 0.13% HMGS 4 0.1% IDI 4 0.1% BBE 3 0.08% XMT_MXMT_DXMT 3 0.08% CHI 3 0.08% DET2 3 0.08% ODC 2 0.05% CYP80F1 2 0.05% CPI1 2 0.05% DWF1 2 0.05% CMK/IspE 2 0.05% HDS/IspG 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% HDR/IspH 2 0.05% PMK 2 0.05% DWF7 1 0.03% DWF5 1 0.03% FK 1 0.03% HYD1 1 0.03%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	476	19	BAHD (174)	View species results
Alkaloid pathway	359	23	7DLGT (82)	View species results
Phenylpropanoid pathway	327	12	POD (122)	View species results
Flavonoid pathway	235	13	UFGT (155)	View species results
Rosmarinic acid pathway	150	7	C4H (56)	View species results
Steroid pathway	82	11	CAS (33)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1428	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	317	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
avicennia_marina_AM_22779	Alkaloid	NMT	medium	pass	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
avicennia_marina_AM_22964	Alkaloid	NMT	medium	pass	NMT__00069__sp_Q9ZSM8_EZA1_ARATH
avicennia_marina_AM_23743	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
avicennia_marina_AM_24058	Alkaloid	NMT	low	borderline	NMT__00039__sp_Q84W92_ANM13_ARATH
avicennia_marina_AM_24869	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
avicennia_marina_AM_25714	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
avicennia_marina_AM_26217	Alkaloid	NMT	medium	pass	NMT__00055__sp_Q9FNC7_SUVR2_ARATH
avicennia_marina_AM_26320	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
avicennia_marina_AM_26393	Alkaloid	NMT	medium	pass	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
avicennia_marina_AM_26394	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
avicennia_marina_AM_26752	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
avicennia_marina_AM_26883	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
avicennia_marina_AM_27208	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
avicennia_marina_AM_27512	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
avicennia_marina_AM_27749	Alkaloid	NMT	medium	pass	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
avicennia_marina_AM_28972	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
avicennia_marina_AM_29128	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
avicennia_marina_AM_29496	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
avicennia_marina_AM_29993	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
avicennia_marina_AM_30883	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
avicennia_marina_AM_30887	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
avicennia_marina_AM_31107	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
avicennia_marina_AM_31183	Alkaloid	NMT	low	borderline	NMT__00059__sp_Q9M571_PEAMT_SPIOL
avicennia_marina_AM_31983	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
avicennia_marina_AM_32114	Alkaloid	NMT	medium	pass	NMT__00024__sp_P0CB22_ATX2_ARATH
avicennia_marina_AM_32374	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
avicennia_marina_AM_32729	Alkaloid	NMT	medium	borderline	NMT__00059__sp_Q9M571_PEAMT_SPIOL
avicennia_marina_AM_33880	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
avicennia_marina_AM_33905	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH