PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.22% Alkaloid pathway 22.04% Phenylpropanoid pathway 20.07% Flavonoid pathway 14.43% Rosmarinic acid pathway 9.21% Steroid pathway 5.03%
Family Distribution
BAHD 5.81% C3'H/CYP98A 5.66% C4H 5.46% UGT 4.76% 4CL 4.74% 7DLGT 4.31% UFGT 4.16% IFS 3.98%
Other Families 61.11%
More Families (97)
CYP76 146 3.66% POD 139 3.48% T3O 137 3.43% F3H 106 2.66% DWF4/CYP90B1 85 2.13% NMT 79 1.98% CAD 76 1.9% F3'H/CYP75B 72 1.8% CODM/T6ODM 68 1.7% BR6OX2/CYP85A2 61 1.53% STR 56 1.4% SMT1/SMT2/SMT3 53 1.33% H6H 50 1.25% LAC 45 1.13% IFR 44 1.1% TRI/TRII 43 1.08% GS 43 1.08% HCT 43 1.08% CYP71 43 1.08% RAS 42 1.05% CAS 42 1.05% CYP90D1 40 1.0% PMT 38 0.95% PYKS 37 0.93% ANR 36 0.9% IO 32 0.8% T16H 31 0.78% TPS 31 0.78% G8O/G8H 30 0.75% SGD 29 0.73% GES 28 0.7% NCS 27 0.68% COMT 27 0.68% SLS 25 0.63% 8HGO 24 0.6% CSE 24 0.6% CPD/CYP90A1 24 0.6% FNS 21 0.53% TAT 21 0.53% CCR 20 0.5% CYP51G1 18 0.45% ANS/LDOX 17 0.43% F3'5'H/CYP75A 16 0.4% FPPS 16 0.4% GGPPS 16 0.4% CNMT 15 0.38% 7DLH 15 0.38% PAL 15 0.38% AACT 14 0.35% HPPR 13 0.33% BR6OX1/CYP85A1 13 0.33% COR 12 0.3% CHS 12 0.3% ROT3/CYP90C1 12 0.3% DFR 11 0.28% 16OMT 10 0.25% LAMT 10 0.25% F5H/CYP84A 10 0.25% MPO 9 0.23% CCoAOMT 9 0.23% CPR 9 0.23% 6OMT_4OMT_SOMT 8 0.2% CYP80B1 8 0.2% SQS/FDFT1 8 0.2% SQE 8 0.2% ISY 7 0.18% ADC 7 0.18% HMGR 7 0.18% DXS 7 0.18% TYDC_DDC 6 0.15% FLS 6 0.15% SMO1/SMO2 6 0.15% MVD 6 0.15% MVK 6 0.15% TDC 5 0.13% CYP719 5 0.13% MCT/IspD 5 0.13% HMGS 4 0.1% IDI 4 0.1% BBE 3 0.08% XMT_MXMT_DXMT 3 0.08% CHI 3 0.08% DET2 3 0.08% ODC 2 0.05% CYP80F1 2 0.05% CPI1 2 0.05% DWF1 2 0.05% CMK/IspE 2 0.05% HDS/IspG 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% HDR/IspH 2 0.05% PMK 2 0.05% DWF7 1 0.03% DWF5 1 0.03% FK 1 0.03% HYD1 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
avicennia_marina_AM_29819 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
avicennia_marina_AM_30415 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
avicennia_marina_AM_31388 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
avicennia_marina_AM_32645 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
avicennia_marina_AM_32977 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
avicennia_marina_AM_33464 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR