PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
avicennia_marina_AM_27527 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_27590 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_29185 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_29187 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_29575 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_29729 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_29849 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_30985 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_31429 Rosmarinic Acid 4CL low borderline
avicennia_marina_AM_32404 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_33018 Rosmarinic Acid 4CL low borderline
avicennia_marina_AM_33021 Rosmarinic Acid 4CL medium pass
avicennia_marina_AM_33058 Rosmarinic Acid 4CL low borderline
avicennia_marina_AM_00028 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_00047 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_00093 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_00150 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_00226 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_00929 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_00957 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_00965 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_01286 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_01287 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_01291 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_01998 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_02092 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_02093 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_02370 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_02372 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_02399 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_02727 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_02772 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_03008 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_03263 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_03264 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_04298 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_04497 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_04800 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_04801 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_04802 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_05074 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_05606 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_05631 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_05967 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_07161 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_07250 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_07251 Rosmarinic Acid C4H medium pass
avicennia_marina_AM_07286 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_07287 Rosmarinic Acid C4H low borderline
avicennia_marina_AM_07350 Rosmarinic Acid C4H low borderline