Avicennia marina (avicennia_marina)
Imported from atlas release summary for Avicennia marina.
1935
Candidate Protein Records
1629
Pathway-Level Records
3991
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3991
Family-Level Calls
BAHD
5.81%
C3'H/CYP98A
5.66%
C4H
5.46%
UGT
4.76%
4CL
4.74%
7DLGT
4.31%
UFGT
4.16%
IFS
3.98%
Other Families
61.11%
More Families (97)
CYP76
146
3.66%
POD
139
3.48%
T3O
137
3.43%
F3H
106
2.66%
DWF4/CYP90B1
85
2.13%
NMT
79
1.98%
CAD
76
1.9%
F3'H/CYP75B
72
1.8%
CODM/T6ODM
68
1.7%
BR6OX2/CYP85A2
61
1.53%
STR
56
1.4%
SMT1/SMT2/SMT3
53
1.33%
H6H
50
1.25%
LAC
45
1.13%
IFR
44
1.1%
TRI/TRII
43
1.08%
GS
43
1.08%
HCT
43
1.08%
CYP71
43
1.08%
RAS
42
1.05%
CAS
42
1.05%
CYP90D1
40
1.0%
PMT
38
0.95%
PYKS
37
0.93%
ANR
36
0.9%
IO
32
0.8%
T16H
31
0.78%
TPS
31
0.78%
G8O/G8H
30
0.75%
SGD
29
0.73%
GES
28
0.7%
NCS
27
0.68%
COMT
27
0.68%
SLS
25
0.63%
8HGO
24
0.6%
CSE
24
0.6%
CPD/CYP90A1
24
0.6%
FNS
21
0.53%
TAT
21
0.53%
CCR
20
0.5%
CYP51G1
18
0.45%
ANS/LDOX
17
0.43%
F3'5'H/CYP75A
16
0.4%
FPPS
16
0.4%
GGPPS
16
0.4%
CNMT
15
0.38%
7DLH
15
0.38%
PAL
15
0.38%
AACT
14
0.35%
HPPR
13
0.33%
BR6OX1/CYP85A1
13
0.33%
COR
12
0.3%
CHS
12
0.3%
ROT3/CYP90C1
12
0.3%
DFR
11
0.28%
16OMT
10
0.25%
LAMT
10
0.25%
F5H/CYP84A
10
0.25%
MPO
9
0.23%
CCoAOMT
9
0.23%
CPR
9
0.23%
6OMT_4OMT_SOMT
8
0.2%
CYP80B1
8
0.2%
SQS/FDFT1
8
0.2%
SQE
8
0.2%
ISY
7
0.18%
ADC
7
0.18%
HMGR
7
0.18%
DXS
7
0.18%
TYDC_DDC
6
0.15%
FLS
6
0.15%
SMO1/SMO2
6
0.15%
MVD
6
0.15%
MVK
6
0.15%
TDC
5
0.13%
CYP719
5
0.13%
MCT/IspD
5
0.13%
HMGS
4
0.1%
IDI
4
0.1%
BBE
3
0.08%
XMT_MXMT_DXMT
3
0.08%
CHI
3
0.08%
DET2
3
0.08%
ODC
2
0.05%
CYP80F1
2
0.05%
CPI1
2
0.05%
DWF1
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
HDR/IspH
2
0.05%
PMK
2
0.05%
DWF7
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HYD1
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 476 | 19 | BAHD (174) | View species results |
| Alkaloid pathway | 359 | 23 | 7DLGT (82) | View species results |
| Phenylpropanoid pathway | 327 | 12 | POD (122) | View species results |
| Flavonoid pathway | 235 | 13 | UFGT (155) | View species results |
| Rosmarinic acid pathway | 150 | 7 | C4H (56) | View species results |
| Steroid pathway | 82 | 11 | CAS (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1428 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 317 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| avicennia_marina_AM_20515 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_20681 | Alkaloid | TRI/TRII | low | borderline |
| avicennia_marina_AM_20995 | Alkaloid | TRI/TRII | low | borderline |
| avicennia_marina_AM_22899 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_22986 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_24728 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_24860 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_28032 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_28661 | Alkaloid | TRI/TRII | low | borderline |
| avicennia_marina_AM_30394 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_30528 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_30529 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_31245 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_31487 | Alkaloid | TRI/TRII | low | borderline |
| avicennia_marina_AM_31597 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_31902 | Alkaloid | TRI/TRII | low | borderline |
| avicennia_marina_AM_32851 | Alkaloid | TRI/TRII | medium | pass |
| avicennia_marina_AM_09984 | Alkaloid | TYDC_DDC | medium | borderline |
| avicennia_marina_AM_13268 | Alkaloid | TYDC_DDC | medium | borderline |
| avicennia_marina_AM_21123 | Alkaloid | TYDC_DDC | medium | borderline |
| avicennia_marina_AM_23276 | Alkaloid | TYDC_DDC | medium | borderline |
| avicennia_marina_AM_25089 | Alkaloid | TYDC_DDC | medium | borderline |
| avicennia_marina_AM_25347 | Alkaloid | TYDC_DDC | medium | borderline |
| avicennia_marina_AM_15588 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| avicennia_marina_AM_26834 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| avicennia_marina_AM_26835 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| avicennia_marina_AM_00345 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_00439 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_00674 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_00811 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_00868 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_01815 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_02532 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_02826 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_02866 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_05392 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_05593 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_06181 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_06523 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_06672 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_06725 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_07478 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_10885 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_11179 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_11486 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_13289 | Flavonoid | 4CL | low | borderline |
| avicennia_marina_AM_13870 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_13882 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_14214 | Flavonoid | 4CL | medium | pass |
| avicennia_marina_AM_15998 | Flavonoid | 4CL | low | borderline |