PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
avicennia_marina_AM_23355 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_25007 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_25056 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_25245 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_25276 Alkaloid CODM/T6ODM low borderline
avicennia_marina_AM_25842 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_25844 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_25965 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_26524 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_26705 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_26706 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_28663 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_29304 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_29346 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_30124 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_30232 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_31333 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_33109 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_33545 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_33597 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_33936 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_33987 Alkaloid CODM/T6ODM medium borderline
avicennia_marina_AM_04226 Alkaloid COR medium pass
avicennia_marina_AM_04961 Alkaloid COR medium pass
avicennia_marina_AM_04962 Alkaloid COR low borderline
avicennia_marina_AM_08178 Alkaloid COR medium pass
avicennia_marina_AM_10184 Alkaloid COR medium pass
avicennia_marina_AM_16242 Alkaloid COR medium pass
avicennia_marina_AM_16243 Alkaloid COR medium pass
avicennia_marina_AM_16244 Alkaloid COR medium pass
avicennia_marina_AM_16245 Alkaloid COR medium pass
avicennia_marina_AM_16538 Alkaloid COR medium pass
avicennia_marina_AM_17182 Alkaloid COR medium pass
avicennia_marina_AM_22476 Alkaloid COR medium pass
avicennia_marina_AM_04497 Alkaloid CYP719 medium borderline
avicennia_marina_AM_11034 Alkaloid CYP719 medium borderline
avicennia_marina_AM_13131 Alkaloid CYP719 medium borderline
avicennia_marina_AM_21712 Alkaloid CYP719 medium borderline
avicennia_marina_AM_29681 Alkaloid CYP719 medium borderline
avicennia_marina_AM_05074 Alkaloid CYP80B1 medium borderline
avicennia_marina_AM_07250 Alkaloid CYP80B1 medium borderline
avicennia_marina_AM_20026 Alkaloid CYP80B1 low borderline
avicennia_marina_AM_23052 Alkaloid CYP80B1 medium borderline
avicennia_marina_AM_23463 Alkaloid CYP80B1 medium borderline
avicennia_marina_AM_24301 Alkaloid CYP80B1 medium borderline
avicennia_marina_AM_29533 Alkaloid CYP80B1 medium borderline
avicennia_marina_AM_33387 Alkaloid CYP80B1 medium borderline
avicennia_marina_AM_16067 Alkaloid CYP80F1 medium borderline
avicennia_marina_AM_18030 Alkaloid CYP80F1 medium borderline
avicennia_marina_AM_00957 Alkaloid G8O/G8H low borderline