PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Gene Pathway Family Confidence Status
avicennia_marina_AM_21073 Flavonoid F3H medium borderline
avicennia_marina_AM_21074 Flavonoid F3H medium borderline
avicennia_marina_AM_21080 Flavonoid F3H medium borderline
avicennia_marina_AM_21447 Flavonoid F3H medium borderline
avicennia_marina_AM_21868 Flavonoid F3H medium borderline
avicennia_marina_AM_22127 Flavonoid F3H low borderline
avicennia_marina_AM_22664 Flavonoid F3H medium borderline
avicennia_marina_AM_22666 Flavonoid F3H medium borderline
avicennia_marina_AM_22667 Flavonoid F3H medium borderline
avicennia_marina_AM_22668 Flavonoid F3H medium borderline
avicennia_marina_AM_22849 Flavonoid F3H low borderline
avicennia_marina_AM_23863 Flavonoid F3H medium borderline
avicennia_marina_AM_25007 Flavonoid F3H medium borderline
avicennia_marina_AM_25008 Flavonoid F3H medium borderline
avicennia_marina_AM_25245 Flavonoid F3H medium borderline
avicennia_marina_AM_25276 Flavonoid F3H medium pass
avicennia_marina_AM_25698 Flavonoid F3H medium borderline
avicennia_marina_AM_25726 Flavonoid F3H medium borderline
avicennia_marina_AM_25842 Flavonoid F3H medium borderline
avicennia_marina_AM_25844 Flavonoid F3H medium borderline
avicennia_marina_AM_25965 Flavonoid F3H medium borderline
avicennia_marina_AM_26239 Flavonoid F3H medium borderline
avicennia_marina_AM_26240 Flavonoid F3H medium pass
avicennia_marina_AM_26705 Flavonoid F3H medium borderline
avicennia_marina_AM_26706 Flavonoid F3H medium borderline
avicennia_marina_AM_27099 Flavonoid F3H low borderline
avicennia_marina_AM_28004 Flavonoid F3H medium borderline
avicennia_marina_AM_28510 Flavonoid F3H medium borderline
avicennia_marina_AM_28644 Flavonoid F3H low borderline
avicennia_marina_AM_28663 Flavonoid F3H medium borderline
avicennia_marina_AM_29304 Flavonoid F3H medium borderline
avicennia_marina_AM_30124 Flavonoid F3H medium borderline
avicennia_marina_AM_30232 Flavonoid F3H medium borderline
avicennia_marina_AM_30822 Flavonoid F3H low borderline
avicennia_marina_AM_31060 Flavonoid F3H low borderline
avicennia_marina_AM_31333 Flavonoid F3H medium borderline
avicennia_marina_AM_31442 Flavonoid F3H medium borderline
avicennia_marina_AM_33109 Flavonoid F3H medium borderline
avicennia_marina_AM_33545 Flavonoid F3H medium borderline
avicennia_marina_AM_33596 Flavonoid F3H low borderline
avicennia_marina_AM_33597 Flavonoid F3H medium borderline
avicennia_marina_AM_33935 Flavonoid F3H medium borderline
avicennia_marina_AM_33936 Flavonoid F3H medium borderline
avicennia_marina_AM_33987 Flavonoid F3H medium borderline
avicennia_marina_AM_00121 Flavonoid FLS low borderline
avicennia_marina_AM_01300 Flavonoid FLS medium borderline
avicennia_marina_AM_02224 Flavonoid FLS low borderline
avicennia_marina_AM_12251 Flavonoid FLS medium borderline
avicennia_marina_AM_15261 Flavonoid FLS medium borderline
avicennia_marina_AM_15504 Flavonoid FLS medium pass