PlantSME Plant secondary metabolism enzyme database

Brachypodium hybridum (brachypodium_hybridum)

Imported from atlas release summary for Brachypodium hybridum.

3404
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 954 20 BAHD (403) View species results
Phenylpropanoid pathway 766 11 POD (403) View species results
Alkaloid pathway 763 20 7DLGT (158) View species results
Flavonoid pathway 458 10 UFGT (324) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 214 12 SMT1/SMT2/SMT3 (112) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2966 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 712 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
BhybBhD10055950.1 Alkaloid LAMT medium borderline
BhybBhD10056430.1 Alkaloid LAMT medium borderline
BhybBhD10058970.1 Alkaloid LAMT medium borderline
BhybBhD20170700.1 Alkaloid LAMT medium borderline
BhybBhD20170700.2 Alkaloid LAMT medium borderline
BhybBhD20187380.1 Alkaloid LAMT medium borderline
BhybBhD20187390.1 Alkaloid LAMT medium borderline
BhybBhD30270700.1 Alkaloid LAMT medium borderline
BhybBhD40286440.1 Alkaloid LAMT medium borderline
BhybBhD40286440.2 Alkaloid LAMT medium pass
BhybBhD40298110.1 Alkaloid LAMT medium borderline
BhybBhD40332490.1 Alkaloid LAMT low borderline
BhybBhS100436610.1 Alkaloid LAMT medium borderline
BhybBhS100438100.1 Alkaloid LAMT medium borderline
BhybBhS10380250.1 Alkaloid LAMT medium borderline
BhybBhS10380260.1 Alkaloid LAMT medium borderline
BhybBhS10380260.2 Alkaloid LAMT medium borderline
BhybBhS10380260.3 Alkaloid LAMT medium borderline
BhybBhS10395410.1 Alkaloid LAMT medium borderline
BhybBhS40524250.1 Alkaloid LAMT medium borderline
BhybBhS50583960.1 Alkaloid LAMT low borderline
BhybBhS70627330.1 Alkaloid LAMT medium borderline
BhybBhS70629430.1 Alkaloid LAMT medium borderline
BhybBhS70629430.2 Alkaloid LAMT medium borderline
BhybBhS70629800.1 Alkaloid LAMT medium borderline