PlantSME Plant secondary metabolism enzyme database

Brachypodium hybridum (brachypodium_hybridum)

Imported from atlas release summary for Brachypodium hybridum.

3404
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.03% Phenylpropanoid pathway 22.5% Alkaloid pathway 22.41% Flavonoid pathway 13.45% Rosmarinic acid pathway 7.31% Steroid pathway 6.29%
Family Distribution
BAHD 6.79% C3'H/CYP98A 6.25% C4H 5.96% POD 5.29% UGT 4.29% 7DLGT 4.27% UFGT 4.21% 4CL 3.6%
Other Families 59.35%
More Families (97)
IFS 269 3.35% T3O 251 3.12% CYP76 248 3.09% NMT 206 2.56% DWF4/CYP90B1 200 2.49% F3'H/CYP75B 182 2.26% SMT1/SMT2/SMT3 166 2.07% F3H 163 2.03% STR 160 1.99% BR6OX2/CYP85A2 155 1.93% CYP71 129 1.61% SLS 99 1.23% CODM/T6ODM 98 1.22% CAD 94 1.17% RAS 93 1.16% TRI/TRII 91 1.13% SGD 91 1.13% CSE 85 1.06% LAC 83 1.03% PYKS 80 1.0% CAS 77 0.96% PMT 73 0.91% HCT 73 0.91% CCR 67 0.83% G8O/G8H 65 0.81% IFR 65 0.81% H6H 63 0.78% ANR 62 0.77% T16H 61 0.76% TPS 61 0.76% GES 59 0.73% CYP51G1 59 0.73% FNS 53 0.66% CYP90D1 53 0.66% COMT 52 0.65% PAL 48 0.6% GS 41 0.51% 16OMT 40 0.5% DFR 38 0.47% CPD/CYP90A1 38 0.47% IO 36 0.45% F3'5'H/CYP75A 34 0.42% BBE 31 0.39% BR6OX1/CYP85A1 30 0.37% 8HGO 28 0.35% CHS 27 0.34% NCS 26 0.32% LAMT 25 0.31% 7DLH 23 0.29% TYDC_DDC 22 0.27% TAT 22 0.27% FPPS 22 0.27% COR 21 0.26% CNMT 20 0.25% F5H/CYP84A 19 0.24% CCoAOMT 18 0.22% GGPPS 18 0.22% SQS/FDFT1 15 0.19% HPPR 14 0.17% SMO1/SMO2 14 0.17% CYP80B1 13 0.16% CPR 13 0.16% TDC 11 0.14% AACT 11 0.14% MPO 10 0.12% CYP719 9 0.11% ROT3/CYP90C1 9 0.11% MVD 9 0.11% HMGR 9 0.11% ANS/LDOX 8 0.1% MVK 8 0.1% ODC 6 0.07% CHI 6 0.07% FLS 6 0.07% SQE 6 0.07% DET2 6 0.07% IDI 6 0.07% PMK 6 0.07% MCT/IspD 6 0.07% DWF1 5 0.06% DXS 5 0.06% HMGS 5 0.06% ADC 4 0.05% XMT_MXMT_DXMT 4 0.05% MDS/IspF 4 0.05% CYP80F1 3 0.04% 6OMT_4OMT_SOMT 3 0.04% CPI1 3 0.04% DWF5 3 0.04% ISY 2 0.02% DWF7 2 0.02% HYD1 2 0.02% FK 2 0.02% HDR/IspH 2 0.02% DXR 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 954 20 BAHD (403) View species results
Phenylpropanoid pathway 766 11 POD (403) View species results
Alkaloid pathway 763 20 7DLGT (158) View species results
Flavonoid pathway 458 10 UFGT (324) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 214 12 SMT1/SMT2/SMT3 (112) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2966 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 712 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ROT3/CYP90C1
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Gene Pathway Family Confidence Status Best Target
BhybBhD20150220.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
BhybBhD30262320.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
BhybBhD50340240.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
BhybBhD50365020.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
BhybBhS20455220.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
BhybBhS20484330.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
BhybBhS40532050.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
BhybBhS80664150.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
BhybBhS90690320.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH