Brachypodium hybridum (brachypodium_hybridum)
Imported from atlas release summary for Brachypodium hybridum.
3404
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3404
Candidate Genes
BAHD
6.79%
C3'H/CYP98A
6.25%
C4H
5.96%
POD
5.29%
UGT
4.29%
7DLGT
4.27%
UFGT
4.21%
4CL
3.6%
Other Families
59.35%
More Families (97)
IFS
269
3.35%
T3O
251
3.12%
CYP76
248
3.09%
NMT
206
2.56%
DWF4/CYP90B1
200
2.49%
F3'H/CYP75B
182
2.26%
SMT1/SMT2/SMT3
166
2.07%
F3H
163
2.03%
STR
160
1.99%
BR6OX2/CYP85A2
155
1.93%
CYP71
129
1.61%
SLS
99
1.23%
CODM/T6ODM
98
1.22%
CAD
94
1.17%
RAS
93
1.16%
TRI/TRII
91
1.13%
SGD
91
1.13%
CSE
85
1.06%
LAC
83
1.03%
PYKS
80
1.0%
CAS
77
0.96%
PMT
73
0.91%
HCT
73
0.91%
CCR
67
0.83%
G8O/G8H
65
0.81%
IFR
65
0.81%
H6H
63
0.78%
ANR
62
0.77%
T16H
61
0.76%
TPS
61
0.76%
GES
59
0.73%
CYP51G1
59
0.73%
FNS
53
0.66%
CYP90D1
53
0.66%
COMT
52
0.65%
PAL
48
0.6%
GS
41
0.51%
16OMT
40
0.5%
DFR
38
0.47%
CPD/CYP90A1
38
0.47%
IO
36
0.45%
F3'5'H/CYP75A
34
0.42%
BBE
31
0.39%
BR6OX1/CYP85A1
30
0.37%
8HGO
28
0.35%
CHS
27
0.34%
NCS
26
0.32%
LAMT
25
0.31%
7DLH
23
0.29%
TYDC_DDC
22
0.27%
TAT
22
0.27%
FPPS
22
0.27%
COR
21
0.26%
CNMT
20
0.25%
F5H/CYP84A
19
0.24%
CCoAOMT
18
0.22%
GGPPS
18
0.22%
SQS/FDFT1
15
0.19%
HPPR
14
0.17%
SMO1/SMO2
14
0.17%
CYP80B1
13
0.16%
CPR
13
0.16%
TDC
11
0.14%
AACT
11
0.14%
MPO
10
0.12%
CYP719
9
0.11%
ROT3/CYP90C1
9
0.11%
MVD
9
0.11%
HMGR
9
0.11%
ANS/LDOX
8
0.1%
MVK
8
0.1%
ODC
6
0.07%
CHI
6
0.07%
FLS
6
0.07%
SQE
6
0.07%
DET2
6
0.07%
IDI
6
0.07%
PMK
6
0.07%
MCT/IspD
6
0.07%
DWF1
5
0.06%
DXS
5
0.06%
HMGS
5
0.06%
ADC
4
0.05%
XMT_MXMT_DXMT
4
0.05%
MDS/IspF
4
0.05%
CYP80F1
3
0.04%
6OMT_4OMT_SOMT
3
0.04%
CPI1
3
0.04%
DWF5
3
0.04%
ISY
2
0.02%
DWF7
2
0.02%
HYD1
2
0.02%
FK
2
0.02%
HDR/IspH
2
0.02%
DXR
2
0.02%
CMK/IspE
2
0.02%
HDS/IspG
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 954 | 20 | BAHD (403) | View species results |
| Phenylpropanoid pathway | 766 | 11 | POD (403) | View species results |
| Alkaloid pathway | 763 | 20 | 7DLGT (158) | View species results |
| Flavonoid pathway | 458 | 10 | UFGT (324) | View species results |
| Rosmarinic acid pathway | 249 | 7 | C4H (101) | View species results |
| Steroid pathway | 214 | 12 | SMT1/SMT2/SMT3 (112) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2966 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 712 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BhybBhD10003150.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD10005120.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD10005120.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD10010980.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD10017370.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| BhybBhD10022330.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD10023680.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD10024130.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD10029570.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| BhybBhD10043580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD10062880.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| BhybBhD10062900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| BhybBhD10089240.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| BhybBhD10091850.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| BhybBhD10091860.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| BhybBhD10091870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| BhybBhD20117190.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| BhybBhD20152380.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| BhybBhD20155380.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD20186760.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| BhybBhD30220980.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| BhybBhD30251540.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| BhybBhD40287590.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| BhybBhD40291800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| BhybBhD40291810.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| BhybBhD40291820.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| BhybBhD40291840.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| BhybBhD40291850.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| BhybBhD40291850.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| BhybBhD40291860.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| BhybBhD40291870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| BhybBhD40300960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD40303710.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| BhybBhD40321540.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| BhybBhD40321550.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| BhybBhD40331780.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| BhybBhD40333290.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| BhybBhD40333290.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| BhybBhD50348750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| BhybBhD50351110.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| BhybBhD50353720.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| BhybBhD50355690.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| BhybBhD50358090.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| BhybBhD50358100.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhD50362190.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| BhybBhD50362220.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| BhybBhD50362220.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| BhybBhS100434430.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| BhybBhS100441490.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| BhybBhS100441500.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |