PlantSME Plant secondary metabolism enzyme database

Brachypodium hybridum (brachypodium_hybridum)

Imported from atlas release summary for Brachypodium hybridum.

3885
Candidate Protein Records
3404
Pathway-Level Records
8036
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 954 20 BAHD (403) View species results
Phenylpropanoid pathway 766 11 POD (403) View species results
Alkaloid pathway 763 20 7DLGT (158) View species results
Flavonoid pathway 458 10 UFGT (324) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 214 12 SMT1/SMT2/SMT3 (112) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2966 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 712 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BhybBhD20188460.1 Alkaloid PMT low borderline
BhybBhD30203730.1 Alkaloid PMT medium pass
BhybBhD30204420.1 Alkaloid PMT medium borderline
BhybBhD30223940.1 Alkaloid PMT medium pass
BhybBhD30232050.1 Alkaloid PMT medium pass
BhybBhD30241310.1 Alkaloid PMT low borderline
BhybBhD30255230.1 Alkaloid PMT medium pass
BhybBhD40283190.1 Alkaloid PMT medium pass
BhybBhD40305910.1 Alkaloid PMT medium pass
BhybBhD40310080.1 Alkaloid PMT low borderline
BhybBhD40319220.1 Alkaloid PMT medium pass
BhybBhD40329580.1 Alkaloid PMT medium pass
BhybBhD50340640.1 Alkaloid PMT medium pass
BhybBhD50342330.1 Alkaloid PMT medium pass
BhybBhD50342340.1 Alkaloid PMT medium pass
BhybBhS100429270.1 Alkaloid PMT medium pass
BhybBhS10379360.1 Alkaloid PMT low borderline
BhybBhS10379380.1 Alkaloid PMT low borderline
BhybBhS10400400.1 Alkaloid PMT medium pass
BhybBhS10400410.1 Alkaloid PMT medium pass
BhybBhS10414480.1 Alkaloid PMT medium pass
BhybBhS10415020.1 Alkaloid PMT medium pass
BhybBhS10415030.1 Alkaloid PMT medium pass
BhybBhS30488070.1 Alkaloid PMT low borderline
BhybBhS30498620.1 Alkaloid PMT medium pass
BhybBhS30505260.1 Alkaloid PMT medium pass
BhybBhS30512920.1 Alkaloid PMT medium pass
BhybBhS40538420.1 Alkaloid PMT medium pass
BhybBhS40545910.1 Alkaloid PMT medium borderline
BhybBhS40546680.1 Alkaloid PMT medium pass
BhybBhS50572160.1 Alkaloid PMT medium pass
BhybBhS60607740.1 Alkaloid PMT medium borderline
BhybBhS70619780.1 Alkaloid PMT medium pass
BhybBhS70619820.1 Alkaloid PMT medium pass
BhybBhS70619840.1 Alkaloid PMT medium pass
BhybBhS70623950.1 Alkaloid PMT medium pass
BhybBhS70624010.1 Alkaloid PMT low borderline
BhybBhS70624020.1 Alkaloid PMT low borderline
BhybBhS70632840.1 Alkaloid PMT medium borderline
BhybBhS70632840.2 Alkaloid PMT medium borderline
BhybBhS70635360.1 Alkaloid PMT medium pass
BhybBhS70635390.1 Alkaloid PMT medium pass
BhybBhS70638080.1 Alkaloid PMT medium pass
BhybBhS70641370.1 Alkaloid PMT low borderline
BhybBhS80665120.1 Alkaloid PMT medium pass
BhybBhS80668710.1 Alkaloid PMT medium pass
BhybBhS90672760.1 Alkaloid PMT medium pass
BhybBhS90673920.1 Alkaloid PMT medium pass
BhybBhD10016430.1 Alkaloid PYKS high pass
BhybBhD10033750.1 Alkaloid PYKS high pass