Brachypodium hybridum (brachypodium_hybridum)
Imported from atlas release summary for Brachypodium hybridum.
3885
Candidate Protein Records
3404
Pathway-Level Records
8036
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
8036
Family-Level Calls
BAHD
6.79%
C3'H/CYP98A
6.25%
C4H
5.96%
POD
5.29%
UGT
4.29%
7DLGT
4.27%
UFGT
4.21%
4CL
3.6%
Other Families
59.35%
More Families (97)
IFS
269
3.35%
T3O
251
3.12%
CYP76
248
3.09%
NMT
206
2.56%
DWF4/CYP90B1
200
2.49%
F3'H/CYP75B
182
2.26%
SMT1/SMT2/SMT3
166
2.07%
F3H
163
2.03%
STR
160
1.99%
BR6OX2/CYP85A2
155
1.93%
CYP71
129
1.61%
SLS
99
1.23%
CODM/T6ODM
98
1.22%
CAD
94
1.17%
RAS
93
1.16%
TRI/TRII
91
1.13%
SGD
91
1.13%
CSE
85
1.06%
LAC
83
1.03%
PYKS
80
1.0%
CAS
77
0.96%
PMT
73
0.91%
HCT
73
0.91%
CCR
67
0.83%
G8O/G8H
65
0.81%
IFR
65
0.81%
H6H
63
0.78%
ANR
62
0.77%
T16H
61
0.76%
TPS
61
0.76%
GES
59
0.73%
CYP51G1
59
0.73%
FNS
53
0.66%
CYP90D1
53
0.66%
COMT
52
0.65%
PAL
48
0.6%
GS
41
0.51%
16OMT
40
0.5%
DFR
38
0.47%
CPD/CYP90A1
38
0.47%
IO
36
0.45%
F3'5'H/CYP75A
34
0.42%
BBE
31
0.39%
BR6OX1/CYP85A1
30
0.37%
8HGO
28
0.35%
CHS
27
0.34%
NCS
26
0.32%
LAMT
25
0.31%
7DLH
23
0.29%
TYDC_DDC
22
0.27%
TAT
22
0.27%
FPPS
22
0.27%
COR
21
0.26%
CNMT
20
0.25%
F5H/CYP84A
19
0.24%
CCoAOMT
18
0.22%
GGPPS
18
0.22%
SQS/FDFT1
15
0.19%
HPPR
14
0.17%
SMO1/SMO2
14
0.17%
CYP80B1
13
0.16%
CPR
13
0.16%
TDC
11
0.14%
AACT
11
0.14%
MPO
10
0.12%
CYP719
9
0.11%
ROT3/CYP90C1
9
0.11%
MVD
9
0.11%
HMGR
9
0.11%
ANS/LDOX
8
0.1%
MVK
8
0.1%
ODC
6
0.07%
CHI
6
0.07%
FLS
6
0.07%
SQE
6
0.07%
DET2
6
0.07%
IDI
6
0.07%
PMK
6
0.07%
MCT/IspD
6
0.07%
DWF1
5
0.06%
DXS
5
0.06%
HMGS
5
0.06%
ADC
4
0.05%
XMT_MXMT_DXMT
4
0.05%
MDS/IspF
4
0.05%
CYP80F1
3
0.04%
6OMT_4OMT_SOMT
3
0.04%
CPI1
3
0.04%
DWF5
3
0.04%
ISY
2
0.02%
DWF7
2
0.02%
HYD1
2
0.02%
FK
2
0.02%
HDR/IspH
2
0.02%
DXR
2
0.02%
CMK/IspE
2
0.02%
HDS/IspG
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 954 | 20 | BAHD (403) | View species results |
| Phenylpropanoid pathway | 766 | 11 | POD (403) | View species results |
| Alkaloid pathway | 763 | 20 | 7DLGT (158) | View species results |
| Flavonoid pathway | 458 | 10 | UFGT (324) | View species results |
| Rosmarinic acid pathway | 249 | 7 | C4H (101) | View species results |
| Steroid pathway | 214 | 12 | SMT1/SMT2/SMT3 (112) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2966 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 712 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BhybBhS30512410.2 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BhybBhS30517590.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS40526490.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BhybBhS40548630.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS40548630.2 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS40551440.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS50558830.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BhybBhS50571300.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BhybBhS50587260.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS60594030.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BhybBhS60594920.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BhybBhS70620750.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS70620790.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS70620800.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS70624430.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS70635600.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS80658130.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhS80658140.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BhybBhD10010700.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10033910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10038370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10041150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10048060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10048060.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10048060.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10048060.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10048060.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10049050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10051740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10054240.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10075090.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10076530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10077740.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10079850.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10080920.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10081320.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10081560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10081580.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10086390.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10090610.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD10092410.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10092530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BhybBhD10101810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD20108940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD20113690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD20120920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD20144340.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD20144710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD20149160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BhybBhD20164700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |