PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
BnigB8G0048780.1 Alkaloid T3O medium pass
BnigB8G0050500.1 Alkaloid T3O medium borderline
BnigB8G0050900.1 Alkaloid T3O medium borderline
BnigB8G0051210.1 Alkaloid T3O low borderline
BnigB8G0051220.1 Alkaloid T3O medium pass
BnigB8G0051230.1 Alkaloid T3O low borderline
BnigB8G0053570.1 Alkaloid T3O medium pass
BnigB8G0054570.1 Alkaloid T3O medium borderline
BnigB8G0054730.1 Alkaloid T3O medium pass
BnigB8G0054850.1 Alkaloid T3O medium borderline
BnigB8G0054860.1 Alkaloid T3O medium borderline
BnigB8G0054870.1 Alkaloid T3O medium borderline
BnigB8G0058050.1 Alkaloid T3O medium borderline
BnigB8G0058110.1 Alkaloid T3O medium pass
BnigB8G0058630.1 Alkaloid T3O medium borderline
BnigB8G0058640.1 Alkaloid T3O medium borderline
BnigB8G0059480.1 Alkaloid T3O medium borderline
Bnigscaffold_10.10001590.1 Alkaloid T3O medium borderline
Bnigscaffold_11.20008330.1 Alkaloid T3O medium borderline
Bnigscaffold_119.10010650.1 Alkaloid T3O low borderline
Bnigscaffold_12.10012120.1 Alkaloid T3O medium borderline
Bnigscaffold_171.10017930.1 Alkaloid T3O medium borderline
Bnigscaffold_215.10022650.1 Alkaloid T3O low borderline
Bnigscaffold_28.10027200.1 Alkaloid T3O medium borderline
Bnigscaffold_28.10028100.1 Alkaloid T3O medium borderline
Bnigscaffold_28.10028110.1 Alkaloid T3O medium borderline
Bnigscaffold_28.10028120.1 Alkaloid T3O medium borderline
Bnigscaffold_28.10028130.1 Alkaloid T3O medium borderline
Bnigscaffold_28.10028150.1 Alkaloid T3O medium borderline
Bnigscaffold_28.10028170.1 Alkaloid T3O medium borderline
Bnigscaffold_526.10052000.1 Alkaloid T3O medium borderline
Bnigscaffold_67.10059580.1 Alkaloid T3O medium pass
Bnigscaffold_678.10060640.1 Alkaloid T3O medium borderline
Bnigscaffold_726.10061700.1 Alkaloid T3O low borderline
Bnigscaffold_809.10064320.1 Alkaloid T3O medium borderline
Bnigscaffold_82.10065010.1 Alkaloid T3O medium borderline
Bnigscaffold_88.10066450.1 Alkaloid T3O medium borderline