PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bnigscaffold_28.10028720.1 Alkaloid GES low borderline
Bnigscaffold_44.10047160.1 Alkaloid GES low borderline
Bnigscaffold_44.10047200.1 Alkaloid GES low borderline
Bnigscaffold_75.10062760.1 Alkaloid GES medium pass
BnigB1G0010340.1 Alkaloid GS low borderline
BnigB1G0022730.1 Alkaloid GS low borderline
BnigB1G0023790.1 Alkaloid GS low borderline
BnigB1G0023810.1 Alkaloid GS low borderline
BnigB1G0040490.1 Alkaloid GS low borderline
BnigB2G0015810.1 Alkaloid GS low borderline
BnigB2G0054380.1 Alkaloid GS high pass
BnigB2G0054390.1 Alkaloid GS high pass
BnigB2G0054520.1 Alkaloid GS medium pass
BnigB3G0039960.1 Alkaloid GS low borderline
BnigB4G0011730.1 Alkaloid GS medium pass
BnigB4G0037460.1 Alkaloid GS low borderline
BnigB5G0009790.1 Alkaloid GS low borderline
BnigB5G0014170.1 Alkaloid GS high pass
BnigB5G0047990.1 Alkaloid GS high pass
BnigB5G0048000.1 Alkaloid GS medium pass
BnigB7G0007300.1 Alkaloid GS low borderline
BnigB7G0012580.1 Alkaloid GS high pass
BnigB8G0007570.1 Alkaloid GS high pass
BnigB8G0059310.1 Alkaloid GS high pass
Bnigscaffold_10.10000270.1 Alkaloid GS high pass
Bnigscaffold_208.10021790.1 Alkaloid GS medium pass
Bnigscaffold_4473.10047890.1 Alkaloid GS high pass
BnigB1G0011730.1 Alkaloid H6H low borderline
BnigB1G0023680.1 Alkaloid H6H low borderline
BnigB1G0023690.1 Alkaloid H6H medium borderline
BnigB1G0023710.1 Alkaloid H6H medium borderline
BnigB1G0023720.1 Alkaloid H6H low borderline
BnigB1G0023740.1 Alkaloid H6H low borderline
BnigB1G0023760.1 Alkaloid H6H medium pass
BnigB1G0030030.1 Alkaloid H6H medium borderline
BnigB1G0033940.1 Alkaloid H6H low borderline
BnigB1G0036600.1 Alkaloid H6H low borderline
BnigB2G0004670.1 Alkaloid H6H medium borderline
BnigB2G0014640.1 Alkaloid H6H low borderline
BnigB2G0017300.1 Alkaloid H6H medium borderline
BnigB2G0029610.1 Alkaloid H6H medium borderline
BnigB3G0002950.1 Alkaloid H6H medium borderline
BnigB3G0008640.1 Alkaloid H6H medium borderline
BnigB3G0010190.1 Alkaloid H6H low borderline
BnigB3G0010200.1 Alkaloid H6H low borderline
BnigB3G0016510.1 Alkaloid H6H medium borderline
BnigB3G0020880.1 Alkaloid H6H low borderline
BnigB3G0020920.1 Alkaloid H6H low borderline
BnigB3G0031660.1 Alkaloid H6H low borderline
BnigB3G0034070.1 Alkaloid H6H medium borderline