PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BnigB5G0032770.1 Alkaloid G8O/G8H medium borderline
BnigB6G0000010.1 Alkaloid G8O/G8H medium borderline
BnigB6G0024480.1 Alkaloid G8O/G8H medium borderline
BnigB6G0032800.1 Alkaloid G8O/G8H medium borderline
BnigB6G0033820.1 Alkaloid G8O/G8H medium borderline
BnigB6G0038520.1 Alkaloid G8O/G8H medium borderline
BnigB8G0001470.1 Alkaloid G8O/G8H low borderline
BnigB8G0004830.1 Alkaloid G8O/G8H medium borderline
BnigB8G0015880.1 Alkaloid G8O/G8H medium borderline
BnigB8G0016120.1 Alkaloid G8O/G8H medium borderline
BnigB8G0050910.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_201.10020920.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_247.10024890.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_28.10027210.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_47.10048790.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_586.10055430.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_678.10060620.1 Alkaloid G8O/G8H low borderline
BnigB1G0004110.1 Alkaloid GES medium pass
BnigB1G0010670.1 Alkaloid GES low borderline
BnigB1G0010700.1 Alkaloid GES medium pass
BnigB1G0022720.1 Alkaloid GES medium pass
BnigB2G0023730.1 Alkaloid GES medium pass
BnigB2G0037580.1 Alkaloid GES medium pass
BnigB2G0040740.1 Alkaloid GES medium pass
BnigB2G0055300.1 Alkaloid GES low borderline
BnigB3G0024000.1 Alkaloid GES medium pass
BnigB3G0024010.1 Alkaloid GES low borderline
BnigB3G0025680.1 Alkaloid GES low borderline
BnigB4G0038140.1 Alkaloid GES low borderline
BnigB4G0048610.1 Alkaloid GES medium pass
BnigB5G0030940.1 Alkaloid GES medium pass
BnigB5G0031510.1 Alkaloid GES low borderline
BnigB5G0031530.1 Alkaloid GES medium pass
BnigB6G0001840.1 Alkaloid GES low borderline
BnigB6G0022890.1 Alkaloid GES medium pass
BnigB6G0026830.1 Alkaloid GES medium pass
BnigB6G0026860.1 Alkaloid GES low borderline
BnigB6G0032600.1 Alkaloid GES medium pass
BnigB7G0039360.1 Alkaloid GES low borderline
BnigB7G0039370.1 Alkaloid GES medium pass
BnigB7G0039660.1 Alkaloid GES medium pass
BnigB8G0035490.1 Alkaloid GES medium pass
BnigB8G0043670.1 Alkaloid GES medium pass
BnigB8G0043680.1 Alkaloid GES medium pass
BnigB8G0048460.1 Alkaloid GES medium pass
BnigB8G0050210.1 Alkaloid GES medium pass
BnigB8G0050920.1 Alkaloid GES medium pass
BnigB8G0058810.1 Alkaloid GES low borderline
Bnigscaffold_106.10007420.1 Alkaloid GES low borderline
Bnigscaffold_28.10027160.1 Alkaloid GES low borderline