PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bnigscaffold_193.10020430.1 Alkaloid CODM/T6ODM medium borderline
Bnigscaffold_208.10021970.1 Alkaloid CODM/T6ODM medium borderline
Bnigscaffold_42.10043140.1 Alkaloid CODM/T6ODM medium borderline
Bnigscaffold_422.10044770.1 Alkaloid CODM/T6ODM medium borderline
Bnigscaffold_75.10062700.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0004970.1 Alkaloid COR medium pass
BnigB3G0034360.1 Alkaloid COR medium pass
BnigB3G0034380.1 Alkaloid COR medium pass
BnigB4G0007020.1 Alkaloid COR medium pass
BnigB4G0007040.1 Alkaloid COR medium pass
BnigB4G0007050.1 Alkaloid COR medium pass
BnigB4G0007060.1 Alkaloid COR medium pass
BnigB4G0007070.1 Alkaloid COR medium pass
BnigB4G0010680.1 Alkaloid COR medium pass
BnigB6G0011150.1 Alkaloid COR medium pass
BnigB6G0023520.1 Alkaloid COR medium pass
BnigB6G0038000.1 Alkaloid COR medium pass
BnigB7G0010280.1 Alkaloid COR medium pass
Bnigscaffold_67.10059200.1 Alkaloid COR medium pass
Bnigscaffold_895.10067540.1 Alkaloid COR medium pass
BnigB2G0015580.1 Alkaloid CYP719 medium borderline
BnigB2G0053600.1 Alkaloid CYP719 medium borderline
BnigB4G0004500.1 Alkaloid CYP719 medium borderline
BnigB5G0039320.1 Alkaloid CYP719 medium borderline
BnigB7G0015950.1 Alkaloid CYP719 medium borderline
BnigB7G0054760.1 Alkaloid CYP719 medium borderline
BnigB8G0043740.1 Alkaloid CYP719 low borderline
BnigB3G0027440.1 Alkaloid CYP80B1 medium borderline
BnigB3G0054400.1 Alkaloid CYP80B1 medium borderline
BnigB4G0009370.1 Alkaloid CYP80B1 medium borderline
BnigB4G0039760.1 Alkaloid CYP80B1 medium borderline
BnigB5G0014830.1 Alkaloid CYP80B1 medium borderline
BnigB5G0045530.1 Alkaloid CYP80B1 medium borderline
BnigB6G0032880.1 Alkaloid CYP80B1 medium borderline
BnigB8G0055330.1 Alkaloid CYP80B1 medium borderline
Bnigscaffold_42.10043640.1 Alkaloid CYP80B1 medium borderline
BnigB5G0011320.1 Alkaloid CYP80F1 low borderline
BnigB1G0015960.1 Alkaloid G8O/G8H medium borderline
BnigB1G0016740.1 Alkaloid G8O/G8H medium borderline
BnigB1G0018050.1 Alkaloid G8O/G8H medium borderline
BnigB1G0024960.1 Alkaloid G8O/G8H medium borderline
BnigB2G0022500.1 Alkaloid G8O/G8H medium borderline
BnigB2G0048380.1 Alkaloid G8O/G8H medium borderline
BnigB3G0011900.1 Alkaloid G8O/G8H medium borderline
BnigB3G0017660.1 Alkaloid G8O/G8H medium borderline
BnigB3G0038570.1 Alkaloid G8O/G8H medium borderline
BnigB3G0042870.1 Alkaloid G8O/G8H medium borderline
BnigB4G0038150.1 Alkaloid G8O/G8H medium borderline
BnigB4G0043210.1 Alkaloid G8O/G8H medium borderline
BnigB5G0019370.1 Alkaloid G8O/G8H medium borderline