PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
BnigB4G0007730.1 Alkaloid 7DLGT medium pass
BnigB4G0007740.1 Alkaloid 7DLGT low borderline
BnigB4G0007850.1 Alkaloid 7DLGT low borderline
BnigB4G0007860.1 Alkaloid 7DLGT low borderline
BnigB4G0007870.1 Alkaloid 7DLGT medium pass
BnigB4G0007880.1 Alkaloid 7DLGT medium pass
BnigB4G0008480.1 Alkaloid 7DLGT low borderline
BnigB4G0014980.1 Alkaloid 7DLGT medium pass
BnigB4G0024390.1 Alkaloid 7DLGT low borderline
BnigB4G0024400.1 Alkaloid 7DLGT medium pass
BnigB4G0024930.1 Alkaloid 7DLGT medium pass
BnigB4G0025580.1 Alkaloid 7DLGT medium pass
BnigB4G0025590.1 Alkaloid 7DLGT low borderline
BnigB4G0026190.1 Alkaloid 7DLGT medium pass
BnigB4G0026210.1 Alkaloid 7DLGT medium pass
BnigB4G0026430.1 Alkaloid 7DLGT high pass
BnigB4G0028080.1 Alkaloid 7DLGT low borderline
BnigB4G0028100.1 Alkaloid 7DLGT medium pass
BnigB4G0030150.1 Alkaloid 7DLGT medium pass
BnigB4G0030260.1 Alkaloid 7DLGT medium pass
BnigB4G0037700.1 Alkaloid 7DLGT high pass
BnigB4G0047110.1 Alkaloid 7DLGT low borderline
BnigB5G0000510.1 Alkaloid 7DLGT medium pass
BnigB5G0006340.1 Alkaloid 7DLGT high pass
BnigB5G0011240.1 Alkaloid 7DLGT low borderline
BnigB5G0017010.1 Alkaloid 7DLGT low borderline
BnigB5G0017860.1 Alkaloid 7DLGT low borderline
BnigB5G0028400.1 Alkaloid 7DLGT medium pass
BnigB5G0032270.1 Alkaloid 7DLGT medium pass
BnigB5G0035280.1 Alkaloid 7DLGT low borderline
BnigB5G0035290.1 Alkaloid 7DLGT low borderline
BnigB5G0035320.1 Alkaloid 7DLGT low borderline
BnigB5G0037130.1 Alkaloid 7DLGT low borderline
BnigB5G0041580.1 Alkaloid 7DLGT medium pass
BnigB5G0041590.1 Alkaloid 7DLGT low borderline
BnigB6G0003870.1 Alkaloid 7DLGT medium pass
BnigB6G0005260.1 Alkaloid 7DLGT medium pass
BnigB6G0005300.1 Alkaloid 7DLGT low borderline
BnigB7G0007010.1 Alkaloid 7DLGT low borderline
BnigB7G0023490.1 Alkaloid 7DLGT medium pass
BnigB7G0024620.1 Alkaloid 7DLGT low borderline
BnigB7G0025800.1 Alkaloid 7DLGT medium pass
BnigB7G0027080.1 Alkaloid 7DLGT low borderline
BnigB7G0029410.1 Alkaloid 7DLGT medium pass
BnigB7G0029420.1 Alkaloid 7DLGT medium pass
BnigB7G0029430.1 Alkaloid 7DLGT medium pass
BnigB7G0029440.1 Alkaloid 7DLGT medium pass
BnigB7G0041560.1 Alkaloid 7DLGT low borderline
BnigB7G0041570.1 Alkaloid 7DLGT low borderline
BnigB7G0041580.1 Alkaloid 7DLGT low borderline