PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
BnigB7G0042080.1 Alkaloid 7DLGT medium pass
BnigB7G0055260.1 Alkaloid 7DLGT low borderline
BnigB8G0002610.1 Alkaloid 7DLGT low borderline
BnigB8G0003380.1 Alkaloid 7DLGT low borderline
BnigB8G0005760.1 Alkaloid 7DLGT medium pass
BnigB8G0007040.1 Alkaloid 7DLGT medium pass
BnigB8G0007060.1 Alkaloid 7DLGT low borderline
BnigB8G0007140.1 Alkaloid 7DLGT low borderline
BnigB8G0007160.1 Alkaloid 7DLGT low borderline
BnigB8G0009000.1 Alkaloid 7DLGT low borderline
BnigB8G0009010.1 Alkaloid 7DLGT medium pass
BnigB8G0009830.1 Alkaloid 7DLGT high pass
BnigB8G0009840.1 Alkaloid 7DLGT medium pass
BnigB8G0010560.1 Alkaloid 7DLGT medium pass
BnigB8G0016720.1 Alkaloid 7DLGT medium pass
BnigB8G0022150.1 Alkaloid 7DLGT high pass
BnigB8G0024540.1 Alkaloid 7DLGT low borderline
BnigB8G0026050.1 Alkaloid 7DLGT low borderline
BnigB8G0031090.1 Alkaloid 7DLGT high pass
BnigB8G0031100.1 Alkaloid 7DLGT high pass
BnigB8G0031130.1 Alkaloid 7DLGT high pass
BnigB8G0031140.1 Alkaloid 7DLGT high pass
BnigB8G0031150.1 Alkaloid 7DLGT high pass
BnigB8G0031160.1 Alkaloid 7DLGT high pass
BnigB8G0035630.1 Alkaloid 7DLGT medium pass
BnigB8G0037210.1 Alkaloid 7DLGT high pass
BnigB8G0051080.1 Alkaloid 7DLGT low borderline
BnigB8G0051130.1 Alkaloid 7DLGT low borderline
BnigB8G0051260.1 Alkaloid 7DLGT medium pass
BnigB8G0052240.1 Alkaloid 7DLGT low borderline
BnigB8G0052250.1 Alkaloid 7DLGT medium pass
Bnigscaffold_12.10012110.1 Alkaloid 7DLGT low borderline
Bnigscaffold_157.10016210.1 Alkaloid 7DLGT medium pass
Bnigscaffold_157.10016220.1 Alkaloid 7DLGT medium pass
Bnigscaffold_2323.10023430.1 Alkaloid 7DLGT low borderline
Bnigscaffold_257.10025530.1 Alkaloid 7DLGT low borderline
Bnigscaffold_28.10027970.1 Alkaloid 7DLGT low borderline
Bnigscaffold_30.10033650.1 Alkaloid 7DLGT medium pass
Bnigscaffold_30.10033680.1 Alkaloid 7DLGT low borderline
Bnigscaffold_329.10036070.1 Alkaloid 7DLGT low borderline
Bnigscaffold_334.10036790.1 Alkaloid 7DLGT low borderline
Bnigscaffold_444.10047670.1 Alkaloid 7DLGT high pass
Bnigscaffold_444.10047680.1 Alkaloid 7DLGT medium pass
Bnigscaffold_449.10047960.1 Alkaloid 7DLGT low borderline
Bnigscaffold_6.40056150.1 Alkaloid 7DLGT high pass
Bnigscaffold_67.10059480.1 Alkaloid 7DLGT low borderline
Bnigscaffold_75.10062860.1 Alkaloid 7DLGT medium pass
Bnigscaffold_88.10066300.1 Alkaloid 7DLGT low borderline
Bnigscaffold_88.10066320.1 Alkaloid 7DLGT low borderline
BnigB1G0010570.1 Alkaloid 7DLH medium borderline