PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
BnigB1G0010590.1 Alkaloid 7DLH medium borderline
BnigB1G0010600.1 Alkaloid 7DLH medium borderline
BnigB1G0010610.1 Alkaloid 7DLH medium borderline
BnigB1G0028130.1 Alkaloid 7DLH low borderline
BnigB2G0020000.1 Alkaloid 7DLH medium borderline
BnigB2G0026470.1 Alkaloid 7DLH medium borderline
BnigB3G0040090.1 Alkaloid 7DLH medium borderline
BnigB4G0004820.1 Alkaloid 7DLH medium borderline
BnigB5G0009300.1 Alkaloid 7DLH medium borderline
BnigB5G0009320.1 Alkaloid 7DLH medium borderline
BnigB5G0009350.1 Alkaloid 7DLH medium borderline
BnigB5G0009360.1 Alkaloid 7DLH medium borderline
BnigB5G0011190.1 Alkaloid 7DLH low borderline
BnigB5G0019960.1 Alkaloid 7DLH medium borderline
BnigB5G0021760.1 Alkaloid 7DLH medium borderline
BnigB6G0029280.1 Alkaloid 7DLH low borderline
BnigB6G0035990.1 Alkaloid 7DLH medium borderline
BnigB7G0010100.1 Alkaloid 7DLH medium borderline
BnigB7G0028580.1 Alkaloid 7DLH medium borderline
BnigB7G0035770.1 Alkaloid 7DLH medium borderline
BnigB7G0052420.1 Alkaloid 7DLH medium borderline
Bnigscaffold_302.10034090.1 Alkaloid 7DLH medium borderline
Bnigscaffold_67.10060080.1 Alkaloid 7DLH low borderline
BnigB1G0014930.1 Alkaloid 8HGO medium pass
BnigB2G0042130.1 Alkaloid 8HGO medium borderline
BnigB3G0003110.1 Alkaloid 8HGO low borderline
BnigB3G0032820.1 Alkaloid 8HGO low borderline
BnigB4G0005350.1 Alkaloid 8HGO low borderline
BnigB4G0031840.1 Alkaloid 8HGO medium borderline
BnigB4G0045770.1 Alkaloid 8HGO low borderline
BnigB5G0013890.1 Alkaloid 8HGO medium pass
BnigB6G0025640.1 Alkaloid 8HGO medium borderline
BnigB6G0035940.1 Alkaloid 8HGO medium borderline
BnigB7G0007650.1 Alkaloid 8HGO medium borderline
BnigB7G0024580.1 Alkaloid 8HGO medium borderline
BnigB7G0029470.1 Alkaloid 8HGO medium borderline
BnigB7G0034030.1 Alkaloid 8HGO low borderline
BnigB7G0042130.1 Alkaloid 8HGO medium borderline
BnigB8G0007480.1 Alkaloid 8HGO medium borderline
BnigB8G0038680.1 Alkaloid 8HGO medium borderline
BnigB8G0039690.1 Alkaloid 8HGO medium borderline
Bnigscaffold_157.10016260.1 Alkaloid 8HGO medium borderline
Bnigscaffold_464.10048170.1 Alkaloid 8HGO medium borderline
BnigB2G0052840.1 Alkaloid ADC medium pass
BnigB2G0052850.1 Alkaloid ADC medium pass
BnigB2G0052860.1 Alkaloid ADC medium pass
BnigB4G0041650.1 Alkaloid ADC medium pass
BnigB5G0005040.1 Alkaloid ADC low borderline
BnigB7G0019060.1 Alkaloid ADC medium pass
BnigB7G0019070.1 Alkaloid ADC medium pass