PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
BnigB2G0040040.1 Rosmarinic Acid C4H low borderline
BnigB2G0040050.1 Rosmarinic Acid C4H low borderline
BnigB2G0040060.1 Rosmarinic Acid C4H low borderline
BnigB2G0040730.1 Rosmarinic Acid C4H low borderline
BnigB2G0042560.1 Rosmarinic Acid C4H medium pass
BnigB2G0048380.1 Rosmarinic Acid C4H low borderline
BnigB2G0050250.1 Rosmarinic Acid C4H low borderline
BnigB2G0053340.1 Rosmarinic Acid C4H low borderline
BnigB2G0053600.1 Rosmarinic Acid C4H low borderline
BnigB2G0055480.1 Rosmarinic Acid C4H low borderline
BnigB2G0055490.1 Rosmarinic Acid C4H low borderline
BnigB2G0055510.1 Rosmarinic Acid C4H low borderline
BnigB2G0055520.1 Rosmarinic Acid C4H medium pass
BnigB2G0055540.1 Rosmarinic Acid C4H low borderline
BnigB2G0055550.1 Rosmarinic Acid C4H medium pass
BnigB2G0055560.1 Rosmarinic Acid C4H low borderline
BnigB2G0055960.1 Rosmarinic Acid C4H low borderline
BnigB3G0000320.1 Rosmarinic Acid C4H low borderline
BnigB3G0005490.1 Rosmarinic Acid C4H medium pass
BnigB3G0005500.1 Rosmarinic Acid C4H medium pass
BnigB3G0005510.1 Rosmarinic Acid C4H medium pass
BnigB3G0005530.1 Rosmarinic Acid C4H low borderline
BnigB3G0009270.1 Rosmarinic Acid C4H low borderline
BnigB3G0010030.1 Rosmarinic Acid C4H low borderline
BnigB3G0011900.1 Rosmarinic Acid C4H medium pass
BnigB3G0017660.1 Rosmarinic Acid C4H medium pass
BnigB3G0022170.1 Rosmarinic Acid C4H low borderline
BnigB3G0022210.1 Rosmarinic Acid C4H low borderline
BnigB3G0023240.1 Rosmarinic Acid C4H medium pass
BnigB3G0023300.1 Rosmarinic Acid C4H medium pass
BnigB3G0026060.1 Rosmarinic Acid C4H low borderline
BnigB3G0027210.1 Rosmarinic Acid C4H low borderline
BnigB3G0027440.1 Rosmarinic Acid C4H low borderline
BnigB3G0030250.1 Rosmarinic Acid C4H medium pass
BnigB3G0037200.1 Rosmarinic Acid C4H low borderline
BnigB3G0038550.1 Rosmarinic Acid C4H medium pass
BnigB3G0038570.1 Rosmarinic Acid C4H medium pass
BnigB3G0038580.1 Rosmarinic Acid C4H medium pass
BnigB3G0038730.1 Rosmarinic Acid C4H medium pass
BnigB3G0038740.1 Rosmarinic Acid C4H medium pass
BnigB3G0042870.1 Rosmarinic Acid C4H medium pass
BnigB3G0042880.1 Rosmarinic Acid C4H low borderline
BnigB3G0053820.1 Rosmarinic Acid C4H low borderline
BnigB3G0054400.1 Rosmarinic Acid C4H low borderline
BnigB4G0001350.1 Rosmarinic Acid C4H low borderline
BnigB4G0004500.1 Rosmarinic Acid C4H low borderline
BnigB4G0004530.1 Rosmarinic Acid C4H medium pass
BnigB4G0006640.1 Rosmarinic Acid C4H medium pass
BnigB4G0009370.1 Rosmarinic Acid C4H low borderline
BnigB4G0009570.1 Rosmarinic Acid C4H low borderline