PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BnigB4G0014210.1 Rosmarinic Acid C4H medium pass
BnigB4G0014220.1 Rosmarinic Acid C4H medium pass
BnigB4G0014250.1 Rosmarinic Acid C4H medium pass
BnigB4G0015450.1 Rosmarinic Acid C4H low borderline
BnigB4G0015950.1 Rosmarinic Acid C4H low borderline
BnigB4G0016510.1 Rosmarinic Acid C4H low borderline
BnigB4G0018290.1 Rosmarinic Acid C4H low borderline
BnigB4G0018490.1 Rosmarinic Acid C4H low borderline
BnigB4G0021410.1 Rosmarinic Acid C4H low borderline
BnigB4G0022060.1 Rosmarinic Acid C4H low borderline
BnigB4G0029710.1 Rosmarinic Acid C4H low borderline
BnigB4G0037370.1 Rosmarinic Acid C4H low borderline
BnigB4G0038150.1 Rosmarinic Acid C4H low borderline
BnigB4G0038160.1 Rosmarinic Acid C4H medium pass
BnigB4G0038890.1 Rosmarinic Acid C4H low borderline
BnigB4G0039760.1 Rosmarinic Acid C4H low borderline
BnigB4G0042270.1 Rosmarinic Acid C4H low borderline
BnigB4G0042280.1 Rosmarinic Acid C4H low borderline
BnigB4G0043210.1 Rosmarinic Acid C4H low borderline
BnigB4G0043590.1 Rosmarinic Acid C4H low borderline
BnigB4G0043600.1 Rosmarinic Acid C4H medium pass
BnigB4G0048130.1 Rosmarinic Acid C4H medium pass
BnigB5G0005660.1 Rosmarinic Acid C4H low borderline
BnigB5G0008420.1 Rosmarinic Acid C4H low borderline
BnigB5G0009300.1 Rosmarinic Acid C4H low borderline
BnigB5G0009310.1 Rosmarinic Acid C4H low borderline
BnigB5G0009320.1 Rosmarinic Acid C4H low borderline
BnigB5G0009340.1 Rosmarinic Acid C4H low borderline
BnigB5G0009370.1 Rosmarinic Acid C4H low borderline
BnigB5G0013920.1 Rosmarinic Acid C4H low borderline
BnigB5G0014800.1 Rosmarinic Acid C4H low borderline
BnigB5G0014840.1 Rosmarinic Acid C4H low borderline
BnigB5G0014850.1 Rosmarinic Acid C4H low borderline
BnigB5G0019370.1 Rosmarinic Acid C4H low borderline
BnigB5G0019960.1 Rosmarinic Acid C4H low borderline
BnigB5G0021760.1 Rosmarinic Acid C4H low borderline
BnigB5G0027470.1 Rosmarinic Acid C4H low borderline
BnigB5G0027890.1 Rosmarinic Acid C4H low borderline
BnigB5G0028330.1 Rosmarinic Acid C4H low borderline
BnigB5G0029280.1 Rosmarinic Acid C4H low borderline
BnigB5G0032770.1 Rosmarinic Acid C4H low borderline
BnigB5G0033310.1 Rosmarinic Acid C4H low borderline
BnigB5G0034200.1 Rosmarinic Acid C4H medium pass
BnigB5G0034210.1 Rosmarinic Acid C4H medium pass
BnigB5G0037590.1 Rosmarinic Acid C4H low borderline
BnigB5G0039320.1 Rosmarinic Acid C4H low borderline
BnigB5G0044880.1 Rosmarinic Acid C4H medium pass
BnigB5G0045510.1 Rosmarinic Acid C4H medium pass
BnigB5G0045530.1 Rosmarinic Acid C4H low borderline
BnigB5G0045700.1 Rosmarinic Acid C4H low borderline