PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
BnigB8G0031080.1 Steroid BR6OX2/CYP85A2 low borderline
BnigB8G0032480.1 Steroid BR6OX2/CYP85A2 low borderline
BnigB8G0039260.1 Steroid BR6OX2/CYP85A2 low borderline
BnigB8G0043920.1 Steroid BR6OX2/CYP85A2 low borderline
BnigB8G0050900.1 Steroid BR6OX2/CYP85A2 low borderline
BnigB8G0054570.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_11.20008330.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_118.10009310.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_171.10017930.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_215.10022650.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_247.10024890.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_28.10028100.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_312.10035160.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_44.20047460.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_678.10060640.1 Steroid BR6OX2/CYP85A2 low borderline
Bnigscaffold_809.10064320.1 Steroid BR6OX2/CYP85A2 low borderline
BnigB1G0003850.1 Steroid CAS medium pass
BnigB1G0014050.1 Steroid CAS medium pass
BnigB1G0020180.1 Steroid CAS medium pass
BnigB1G0032100.1 Steroid CAS medium pass
BnigB1G0040860.1 Steroid CAS medium pass
BnigB2G0036070.1 Steroid CAS medium pass
BnigB2G0037580.1 Steroid CAS medium pass
BnigB2G0040740.1 Steroid CAS low borderline
BnigB3G0024000.1 Steroid CAS medium pass
BnigB4G0021690.1 Steroid CAS medium pass
BnigB4G0032700.1 Steroid CAS medium pass
BnigB4G0041390.1 Steroid CAS medium pass
BnigB4G0041680.1 Steroid CAS medium pass
BnigB4G0043410.1 Steroid CAS medium pass
BnigB4G0044250.1 Steroid CAS medium pass
BnigB4G0048190.1 Steroid CAS medium pass
BnigB4G0048200.1 Steroid CAS medium pass
BnigB4G0048610.1 Steroid CAS medium pass
BnigB5G0001720.1 Steroid CAS medium pass
BnigB5G0014860.1 Steroid CAS medium pass
BnigB5G0024400.1 Steroid CAS medium pass
BnigB5G0027400.1 Steroid CAS low borderline
BnigB5G0028320.1 Steroid CAS medium pass
BnigB5G0030940.1 Steroid CAS low borderline
BnigB5G0032750.1 Steroid CAS medium pass
BnigB5G0049280.1 Steroid CAS medium pass
BnigB6G0032600.1 Steroid CAS low borderline
BnigB6G0037200.1 Steroid CAS medium pass
BnigB6G0038780.1 Steroid CAS medium pass
BnigB7G0039360.1 Steroid CAS low borderline
BnigB8G0011260.1 Steroid CAS medium pass
BnigB8G0043670.1 Steroid CAS low borderline
BnigB8G0050210.1 Steroid CAS medium pass
BnigB8G0053470.1 Steroid CAS medium pass