PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
BnigB8G0056350.1 Steroid CAS medium pass
Bnigscaffold_201.10020940.1 Steroid CAS medium pass
Bnigscaffold_28.10027180.1 Steroid CAS low borderline
Bnigscaffold_28.10028720.1 Steroid CAS medium pass
Bnigscaffold_44.10047160.1 Steroid CAS medium pass
Bnigscaffold_44.10047200.1 Steroid CAS medium pass
Bnigscaffold_75.10062760.1 Steroid CAS low borderline
BnigB1G0023570.1 Steroid CPD/CYP90A1 low borderline
BnigB2G0028760.1 Steroid CPD/CYP90A1 medium borderline
BnigB2G0048380.1 Steroid CPD/CYP90A1 low borderline
BnigB2G0055520.1 Steroid CPD/CYP90A1 low borderline
BnigB3G0018430.1 Steroid CPD/CYP90A1 low borderline
BnigB4G0002130.1 Steroid CPD/CYP90A1 low borderline
BnigB4G0002140.1 Steroid CPD/CYP90A1 low borderline
BnigB4G0011610.1 Steroid CPD/CYP90A1 low borderline
BnigB4G0015950.1 Steroid CPD/CYP90A1 medium borderline
BnigB4G0038890.1 Steroid CPD/CYP90A1 medium borderline
BnigB4G0038990.1 Steroid CPD/CYP90A1 medium borderline
BnigB4G0042330.1 Steroid CPD/CYP90A1 medium borderline
BnigB5G0005660.1 Steroid CPD/CYP90A1 medium borderline
BnigB5G0048290.1 Steroid CPD/CYP90A1 low borderline
BnigB6G0012590.1 Steroid CPD/CYP90A1 low borderline
BnigB6G0029600.1 Steroid CPD/CYP90A1 medium borderline
BnigB6G0032810.1 Steroid CPD/CYP90A1 medium borderline
BnigB7G0019370.1 Steroid CPD/CYP90A1 medium borderline
BnigB7G0051130.1 Steroid CPD/CYP90A1 medium pass
BnigB7G0052050.1 Steroid CPD/CYP90A1 low borderline
BnigB7G0054170.1 Steroid CPD/CYP90A1 low borderline
BnigB8G0043950.1 Steroid CPD/CYP90A1 medium borderline
BnigB8G0058650.1 Steroid CPD/CYP90A1 medium borderline
Bnigscaffold_119.10010650.1 Steroid CPD/CYP90A1 low borderline
Bnigscaffold_67.10060080.1 Steroid CPD/CYP90A1 low borderline
BnigB2G0014070.1 Steroid CPI1 high pass
BnigB3G0025430.1 Steroid CPI1 high pass
Bnigscaffold_290.10030600.1 Steroid CPI1 high pass
BnigB1G0008070.1 Steroid CYP51G1 low borderline
BnigB1G0027730.1 Steroid CYP51G1 medium borderline
BnigB2G0014790.1 Steroid CYP51G1 medium borderline
BnigB2G0042560.1 Steroid CYP51G1 medium borderline
BnigB2G0053340.1 Steroid CYP51G1 medium borderline
BnigB3G0038580.1 Steroid CYP51G1 medium borderline
BnigB5G0050150.1 Steroid CYP51G1 medium borderline
BnigB6G0016420.1 Steroid CYP51G1 medium borderline
BnigB7G0040580.1 Steroid CYP51G1 medium borderline
BnigB7G0053760.1 Steroid CYP51G1 medium borderline
BnigB7G0054730.1 Steroid CYP51G1 medium borderline
BnigB8G0018110.1 Steroid CYP51G1 medium pass
BnigB8G0048470.1 Steroid CYP51G1 medium borderline
BnigB8G0050500.1 Steroid CYP51G1 medium borderline
BnigB8G0056910.1 Steroid CYP51G1 medium borderline