PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
BnigB7G0032270.1 Alkaloid ADC low borderline
BnigB7G0041250.1 Alkaloid ADC medium pass
BnigB8G0057350.1 Alkaloid ADC medium pass
BnigB2G0040960.1 Alkaloid BBE medium borderline
BnigB2G0040970.1 Alkaloid BBE medium borderline
BnigB2G0040980.1 Alkaloid BBE medium borderline
BnigB2G0041000.1 Alkaloid BBE medium borderline
BnigB2G0041010.1 Alkaloid BBE medium borderline
BnigB3G0036150.1 Alkaloid BBE medium borderline
BnigB3G0036190.1 Alkaloid BBE medium borderline
BnigB4G0009280.1 Alkaloid BBE medium borderline
BnigB4G0009290.1 Alkaloid BBE medium borderline
BnigB4G0038560.1 Alkaloid BBE medium borderline
BnigB4G0039600.1 Alkaloid BBE medium borderline
BnigB5G0037760.1 Alkaloid BBE medium borderline
BnigB5G0039440.1 Alkaloid BBE medium borderline
BnigB6G0001220.1 Alkaloid BBE medium borderline
BnigB6G0001280.1 Alkaloid BBE medium borderline
BnigB6G0001290.1 Alkaloid BBE medium borderline
BnigB6G0001300.1 Alkaloid BBE medium borderline
BnigB6G0001310.1 Alkaloid BBE medium borderline
BnigB6G0016520.1 Alkaloid BBE medium borderline
BnigB6G0025940.1 Alkaloid BBE low borderline
BnigB6G0025950.1 Alkaloid BBE medium borderline
BnigB6G0025960.1 Alkaloid BBE medium borderline
BnigB6G0026020.1 Alkaloid BBE medium borderline
BnigB6G0026030.1 Alkaloid BBE medium borderline
BnigB6G0026040.1 Alkaloid BBE medium borderline
BnigB7G0039810.1 Alkaloid BBE medium borderline
BnigB7G0043040.1 Alkaloid BBE medium borderline
BnigB8G0018190.1 Alkaloid BBE medium borderline
BnigB8G0018200.1 Alkaloid BBE medium borderline
BnigB8G0039060.1 Alkaloid BBE medium borderline
BnigB8G0039070.1 Alkaloid BBE medium borderline
BnigB8G0039100.1 Alkaloid BBE medium borderline
BnigB8G0039110.1 Alkaloid BBE medium borderline
BnigB8G0039120.1 Alkaloid BBE medium borderline
BnigB8G0039320.1 Alkaloid BBE medium borderline
BnigB8G0048330.1 Alkaloid BBE medium borderline
BnigB8G0048340.1 Alkaloid BBE medium borderline
Bnigscaffold_28.10027290.1 Alkaloid BBE medium borderline
Bnigscaffold_28.10027300.1 Alkaloid BBE medium borderline
Bnigscaffold_28.10027310.1 Alkaloid BBE medium borderline
Bnigscaffold_42.10042830.1 Alkaloid BBE medium borderline
Bnigscaffold_42.10042860.1 Alkaloid BBE medium borderline
Bnigscaffold_42.10042870.1 Alkaloid BBE medium borderline
Bnigscaffold_42.10042880.1 Alkaloid BBE medium borderline
Bnigscaffold_57.10054060.1 Alkaloid BBE medium borderline
Bnigscaffold_57.10054070.1 Alkaloid BBE medium borderline
Bnigscaffold_57.10054080.1 Alkaloid BBE medium borderline