PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
BnigB1G0025870.1 Alkaloid CNMT low borderline
BnigB1G0028740.1 Alkaloid CNMT medium pass
BnigB2G0026750.1 Alkaloid CNMT low borderline
BnigB2G0051590.1 Alkaloid CNMT medium borderline
BnigB3G0015570.1 Alkaloid CNMT low borderline
BnigB5G0034570.1 Alkaloid CNMT low borderline
BnigB7G0015870.1 Alkaloid CNMT low borderline
BnigB8G0043070.1 Alkaloid CNMT low borderline
Bnigscaffold_10.10000930.1 Alkaloid CNMT medium borderline
BnigB1G0005420.1 Alkaloid CODM/T6ODM medium borderline
BnigB1G0005430.1 Alkaloid CODM/T6ODM medium borderline
BnigB1G0007090.1 Alkaloid CODM/T6ODM medium borderline
BnigB1G0008730.1 Alkaloid CODM/T6ODM medium borderline
BnigB1G0011210.1 Alkaloid CODM/T6ODM medium borderline
BnigB1G0011680.1 Alkaloid CODM/T6ODM medium borderline
BnigB1G0027850.1 Alkaloid CODM/T6ODM medium borderline
BnigB1G0035740.1 Alkaloid CODM/T6ODM medium borderline
BnigB1G0036590.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0016910.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0017310.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0021460.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0028980.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0029480.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0032220.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0032240.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0032820.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0037100.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0042710.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0044890.1 Alkaloid CODM/T6ODM medium borderline
BnigB2G0044950.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0008310.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0009580.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0010480.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0014090.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0024210.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0024240.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0036320.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0044250.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0044260.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0044280.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0044290.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0044300.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0044310.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0044610.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0044620.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0046530.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0053850.1 Alkaloid CODM/T6ODM medium borderline
BnigB3G0054600.1 Alkaloid CODM/T6ODM medium borderline
BnigB4G0003500.1 Alkaloid CODM/T6ODM medium borderline
BnigB4G0009530.1 Alkaloid CODM/T6ODM medium borderline