PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BnigB8G0044880.1 Steroid CYP90D1 low borderline
BnigB8G0044890.1 Steroid CYP90D1 low borderline
BnigB8G0045590.1 Steroid CYP90D1 low borderline
BnigB8G0048780.1 Steroid CYP90D1 medium borderline
BnigB8G0054860.1 Steroid CYP90D1 low borderline
BnigB8G0054870.1 Steroid CYP90D1 low borderline
BnigB8G0055330.1 Steroid CYP90D1 low borderline
Bnigscaffold_28.10028130.1 Steroid CYP90D1 low borderline
Bnigscaffold_586.10055430.1 Steroid CYP90D1 low borderline
Bnigscaffold_88.10066450.1 Steroid CYP90D1 low borderline
BnigB3G0003670.1 Steroid DET2 low borderline
BnigB5G0042460.1 Steroid DET2 medium pass
BnigB6G0012380.1 Steroid DET2 low borderline
BnigB7G0011400.1 Steroid DET2 low borderline
BnigB1G0016140.1 Steroid DWF1 medium pass
BnigB1G0031120.1 Steroid DWF1 medium pass
BnigB5G0014530.1 Steroid DWF1 medium pass
BnigB1G0010570.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0010590.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0010600.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0010610.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0010620.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0015820.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0015940.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0017630.1 Steroid DWF4/CYP90B1 medium borderline
BnigB1G0018050.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0021650.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0024960.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0028810.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0034520.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0034530.1 Steroid DWF4/CYP90B1 low borderline
BnigB1G0040950.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0001540.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0014810.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0015580.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0018910.1 Steroid DWF4/CYP90B1 medium borderline
BnigB2G0020000.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0022500.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0026470.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0028790.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0033420.1 Steroid DWF4/CYP90B1 medium borderline
BnigB2G0035950.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0036760.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0050250.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0055480.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0055490.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0055510.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0055540.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0055560.1 Steroid DWF4/CYP90B1 low borderline
BnigB2G0055960.1 Steroid DWF4/CYP90B1 low borderline