PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bnigscaffold_302.10034090.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_312.10035160.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_42.10043640.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_44.20047460.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_47.10048790.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_47.10048800.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_514.10051480.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_526.10052000.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_586.10055430.1 Rosmarinic Acid C4H medium pass
Bnigscaffold_678.10060620.1 Rosmarinic Acid C4H medium pass
Bnigscaffold_678.10060640.1 Rosmarinic Acid C4H medium pass
Bnigscaffold_809.10064320.1 Rosmarinic Acid C4H medium pass
Bnigscaffold_82.10065010.1 Rosmarinic Acid C4H low borderline
Bnigscaffold_88.10066450.1 Rosmarinic Acid C4H medium pass
Bnigscaffold_88.10066800.1 Rosmarinic Acid C4H low borderline
BnigB1G0019390.1 Rosmarinic Acid CPR medium pass
BnigB1G0025690.1 Rosmarinic Acid CPR low borderline
BnigB2G0019540.1 Rosmarinic Acid CPR medium pass
BnigB2G0021270.1 Rosmarinic Acid CPR low borderline
BnigB2G0035650.1 Rosmarinic Acid CPR medium pass
BnigB2G0044190.1 Rosmarinic Acid CPR medium pass
BnigB2G0044200.1 Rosmarinic Acid CPR medium pass
BnigB2G0049160.1 Rosmarinic Acid CPR medium pass
BnigB3G0007050.1 Rosmarinic Acid CPR medium pass
BnigB3G0009880.1 Rosmarinic Acid CPR low borderline
BnigB3G0028320.1 Rosmarinic Acid CPR low borderline
BnigB4G0018140.1 Rosmarinic Acid CPR low borderline
BnigB5G0014610.1 Rosmarinic Acid CPR low borderline
BnigB8G0003970.1 Rosmarinic Acid CPR low borderline
BnigB8G0051670.1 Rosmarinic Acid CPR medium pass
Bnigscaffold_10.10002400.1 Rosmarinic Acid CPR medium pass
Bnigscaffold_10.10005540.1 Rosmarinic Acid CPR medium pass
Bnigscaffold_12.10013360.1 Rosmarinic Acid CPR low borderline
Bnigscaffold_28.10029280.1 Rosmarinic Acid CPR low borderline
BnigB4G0023280.1 Rosmarinic Acid HPPR medium pass
BnigB4G0033810.1 Rosmarinic Acid HPPR medium pass
BnigB5G0040310.1 Rosmarinic Acid HPPR medium pass
BnigB5G0040330.1 Rosmarinic Acid HPPR medium pass
BnigB5G0040340.1 Rosmarinic Acid HPPR medium pass
BnigB5G0040350.1 Rosmarinic Acid HPPR medium pass
BnigB6G0017150.1 Rosmarinic Acid HPPR medium pass
BnigB2G0028390.1 Rosmarinic Acid PAL high pass
BnigB2G0028400.1 Rosmarinic Acid PAL medium pass
BnigB2G0050150.1 Rosmarinic Acid PAL medium pass
BnigB3G0005560.1 Rosmarinic Acid PAL high pass
BnigB3G0034870.1 Rosmarinic Acid PAL medium pass
BnigB3G0034880.1 Rosmarinic Acid PAL high pass
BnigB3G0034910.1 Rosmarinic Acid PAL medium pass
BnigB3G0034920.1 Rosmarinic Acid PAL medium pass
BnigB4G0007690.1 Rosmarinic Acid PAL medium pass