PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BnigB4G0007700.1 Rosmarinic Acid PAL high pass
BnigB4G0038920.1 Rosmarinic Acid PAL high pass
BnigB4G0047090.1 Rosmarinic Acid PAL high pass
BnigB5G0005440.1 Rosmarinic Acid PAL high pass
BnigB5G0041710.1 Rosmarinic Acid PAL high pass
Bnigscaffold_67.10059990.1 Rosmarinic Acid PAL low borderline
BnigB1G0023240.1 Rosmarinic Acid RAS low borderline
BnigB2G0006310.1 Rosmarinic Acid RAS low borderline
BnigB2G0013740.1 Rosmarinic Acid RAS low borderline
BnigB2G0021150.1 Rosmarinic Acid RAS low borderline
BnigB2G0048130.1 Rosmarinic Acid RAS low borderline
BnigB3G0008560.1 Rosmarinic Acid RAS low borderline
BnigB3G0043210.1 Rosmarinic Acid RAS low borderline
BnigB3G0043910.1 Rosmarinic Acid RAS low borderline
BnigB3G0043940.1 Rosmarinic Acid RAS low borderline
BnigB4G0003410.1 Rosmarinic Acid RAS low borderline
BnigB4G0005050.1 Rosmarinic Acid RAS low borderline
BnigB4G0011170.1 Rosmarinic Acid RAS low borderline
BnigB4G0040240.1 Rosmarinic Acid RAS medium pass
BnigB5G0020120.1 Rosmarinic Acid RAS low borderline
BnigB5G0023790.1 Rosmarinic Acid RAS low borderline
BnigB5G0025440.1 Rosmarinic Acid RAS medium pass
BnigB5G0043750.1 Rosmarinic Acid RAS low borderline
BnigB6G0018300.1 Rosmarinic Acid RAS low borderline
BnigB6G0019000.1 Rosmarinic Acid RAS medium pass
BnigB6G0030000.1 Rosmarinic Acid RAS low borderline
BnigB7G0001800.1 Rosmarinic Acid RAS low borderline
BnigB7G0002790.1 Rosmarinic Acid RAS medium pass
BnigB7G0009070.1 Rosmarinic Acid RAS low borderline
BnigB7G0032390.1 Rosmarinic Acid RAS low borderline
BnigB7G0050920.1 Rosmarinic Acid RAS low borderline
BnigB8G0004810.1 Rosmarinic Acid RAS low borderline
BnigB8G0010410.1 Rosmarinic Acid RAS medium pass
BnigB8G0030060.1 Rosmarinic Acid RAS medium pass
BnigB8G0040110.1 Rosmarinic Acid RAS low borderline
BnigB8G0051880.1 Rosmarinic Acid RAS low borderline
BnigB8G0051890.1 Rosmarinic Acid RAS low borderline
BnigB8G0057940.1 Rosmarinic Acid RAS low borderline
Bnigscaffold_119.10010190.1 Rosmarinic Acid RAS medium pass
Bnigscaffold_240.10024310.1 Rosmarinic Acid RAS low borderline
Bnigscaffold_295.10030810.1 Rosmarinic Acid RAS medium pass
BnigB1G0003530.1 Rosmarinic Acid TAT low borderline
BnigB1G0003590.1 Rosmarinic Acid TAT low borderline
BnigB2G0025050.1 Rosmarinic Acid TAT medium pass
BnigB2G0026930.1 Rosmarinic Acid TAT low borderline
BnigB2G0036350.1 Rosmarinic Acid TAT medium pass
BnigB2G0036390.1 Rosmarinic Acid TAT medium pass
BnigB2G0043390.1 Rosmarinic Acid TAT medium pass
BnigB2G0043400.1 Rosmarinic Acid TAT medium pass
BnigB2G0047670.1 Rosmarinic Acid TAT medium pass