PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bnigscaffold_678.10060640.1 Terpenoid CYP76 medium borderline
Bnigscaffold_82.10065010.1 Terpenoid CYP76 medium pass
BnigB1G0023200.1 Terpenoid DXR high pass
BnigB4G0011110.1 Terpenoid DXR high pass
BnigB1G0015110.1 Terpenoid DXS medium pass
BnigB1G0029960.1 Terpenoid DXS medium pass
BnigB2G0036620.1 Terpenoid DXS medium pass
BnigB8G0027030.1 Terpenoid DXS medium pass
BnigB8G0051070.1 Terpenoid DXS medium pass
BnigB1G0015800.1 Terpenoid FPPS low borderline
BnigB2G0021350.1 Terpenoid FPPS medium pass
BnigB2G0021360.1 Terpenoid FPPS medium pass
BnigB2G0021370.1 Terpenoid FPPS medium pass
BnigB5G0029000.1 Terpenoid FPPS medium borderline
BnigB5G0038350.1 Terpenoid FPPS medium pass
BnigB5G0038360.1 Terpenoid FPPS medium pass
BnigB6G0031090.1 Terpenoid FPPS medium pass
BnigB7G0002400.1 Terpenoid FPPS medium pass
BnigB7G0053640.1 Terpenoid FPPS low borderline
BnigB8G0005010.1 Terpenoid FPPS low borderline
BnigB8G0008120.1 Terpenoid FPPS low borderline
BnigB8G0017670.1 Terpenoid FPPS low borderline
BnigB8G0041550.1 Terpenoid FPPS medium pass
Bnigscaffold_131.10014910.1 Terpenoid FPPS medium pass
BnigB1G0015780.1 Terpenoid GGPPS medium borderline
BnigB1G0015790.1 Terpenoid GGPPS medium borderline
BnigB1G0015830.1 Terpenoid GGPPS medium borderline
BnigB1G0015840.1 Terpenoid GGPPS medium borderline
BnigB1G0015850.1 Terpenoid GGPPS medium borderline
BnigB1G0030890.1 Terpenoid GGPPS medium borderline
BnigB2G0053930.1 Terpenoid GGPPS medium borderline
BnigB3G0036290.1 Terpenoid GGPPS medium borderline
BnigB4G0009440.1 Terpenoid GGPPS medium borderline
BnigB4G0022050.1 Terpenoid GGPPS medium borderline
BnigB5G0009220.1 Terpenoid GGPPS medium borderline
BnigB5G0014870.1 Terpenoid GGPPS medium borderline
BnigB5G0037670.1 Terpenoid GGPPS medium borderline
BnigB5G0048620.1 Terpenoid GGPPS medium borderline
BnigB6G0018760.1 Terpenoid GGPPS medium borderline
BnigB7G0003060.1 Terpenoid GGPPS medium borderline
BnigB7G0009450.1 Terpenoid GGPPS medium borderline
BnigB8G0009590.1 Terpenoid GGPPS medium borderline
Bnigscaffold_193.10020450.1 Terpenoid GGPPS medium borderline
Bnigscaffold_349.10037800.1 Terpenoid GGPPS low borderline
BnigB2G0052520.1 Terpenoid HDR/IspH high pass
BnigB5G0005840.1 Terpenoid HDR/IspH low borderline
BnigB7G0030450.1 Terpenoid HDR/IspH low borderline
BnigB7G0041460.1 Terpenoid HDR/IspH high pass
BnigB8G0017750.1 Terpenoid HDS/IspG high pass
BnigB2G0004220.1 Terpenoid HMGR medium pass