PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BnigB5G0022010.1 Terpenoid HMGR low borderline
BnigB6G0014490.1 Terpenoid HMGR medium pass
BnigB7G0008200.1 Terpenoid HMGR medium pass
Bnigscaffold_919.10067880.1 Terpenoid HMGR medium pass
BnigB3G0012600.1 Terpenoid HMGS high pass
Bnigscaffold_330.10036170.1 Terpenoid HMGS high pass
BnigB1G0004580.1 Terpenoid IDI low borderline
BnigB1G0016980.1 Terpenoid IDI medium pass
BnigB1G0041230.1 Terpenoid IDI medium pass
BnigB3G0049100.1 Terpenoid IDI medium pass
BnigB8G0038000.1 Terpenoid IDI medium pass
BnigB4G0009130.1 Terpenoid MCT/IspD low borderline
BnigB6G0000860.1 Terpenoid MCT/IspD low borderline
BnigB6G0032020.1 Terpenoid MCT/IspD high pass
Bnigscaffold_67.10060220.1 Terpenoid MCT/IspD low borderline
BnigB6G0020300.1 Terpenoid MDS/IspF high pass
BnigB6G0021420.1 Terpenoid MDS/IspF high pass
BnigB2G0019150.1 Terpenoid MVD low borderline
BnigB2G0028570.1 Terpenoid MVD low borderline
BnigB3G0004750.1 Terpenoid MVD low borderline
BnigB3G0054360.1 Terpenoid MVD low borderline
BnigB4G0021910.1 Terpenoid MVD low borderline
BnigB4G0046530.1 Terpenoid MVD medium pass
BnigB7G0052490.1 Terpenoid MVD low borderline
BnigB8G0032140.1 Terpenoid MVD low borderline
BnigB1G0020410.1 Terpenoid MVK medium pass
BnigB5G0003090.1 Terpenoid MVK low borderline
BnigB6G0018010.1 Terpenoid MVK low borderline
BnigB6G0037090.1 Terpenoid MVK medium pass
BnigB7G0001100.1 Terpenoid MVK low borderline
BnigB8G0005300.1 Terpenoid MVK low borderline
BnigB1G0003730.1 Terpenoid PMK low borderline
BnigB6G0011840.1 Terpenoid PMK low borderline
BnigB7G0023900.1 Terpenoid PMK medium pass
Bnigscaffold_10.10005150.1 Terpenoid PMK low borderline
Bnigscaffold_310.10034920.1 Terpenoid PMK medium pass
BnigB1G0004110.1 Terpenoid TPS medium pass
BnigB1G0010670.1 Terpenoid TPS medium pass
BnigB1G0010700.1 Terpenoid TPS medium pass
BnigB1G0022710.1 Terpenoid TPS medium pass
BnigB1G0022720.1 Terpenoid TPS medium pass
BnigB2G0023730.1 Terpenoid TPS medium pass
BnigB2G0024160.1 Terpenoid TPS medium pass
BnigB2G0037580.1 Terpenoid TPS medium pass
BnigB2G0040740.1 Terpenoid TPS medium pass
BnigB3G0024000.1 Terpenoid TPS medium pass
BnigB3G0024010.1 Terpenoid TPS low borderline
BnigB3G0025680.1 Terpenoid TPS low borderline
BnigB4G0038140.1 Terpenoid TPS medium pass
BnigB4G0048610.1 Terpenoid TPS medium pass