PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_60178120.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_60178130.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_60179430.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_80203950.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80203970.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80203980.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80204000.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80204000.2 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80204000.3 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80204000.4 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80204020.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80205970.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_80216140.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_80216470.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_90227320.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_90233500.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_10020830.1 Steroid SQE medium pass
Cclescaffold_10020840.1 Steroid SQE medium pass
Cclescaffold_10020870.1 Steroid SQE medium pass
Cclescaffold_10020880.1 Steroid SQE medium pass
Cclescaffold_50145700.1 Steroid SQE medium pass
Cclescaffold_50145700.2 Steroid SQE medium pass
Cclescaffold_50145700.3 Steroid SQE medium pass
Cclescaffold_70185430.1 Steroid SQE medium pass
Cclescaffold_70198290.1 Steroid SQE low borderline
Cclescaffold_80203410.1 Steroid SQE medium pass
Cclescaffold_80203590.1 Steroid SQE medium pass
Cclescaffold_20026400.1 Steroid SQS/FDFT1 medium pass
Cclescaffold_20026420.1 Steroid SQS/FDFT1 low borderline
Cclescaffold_20027520.1 Steroid SQS/FDFT1 medium pass
Cclescaffold_30066070.1 Steroid SQS/FDFT1 low borderline
Cclescaffold_60173050.1 Steroid SQS/FDFT1 medium pass
Cclescaffold_60173050.2 Steroid SQS/FDFT1 medium pass
Cclescaffold_60173050.3 Steroid SQS/FDFT1 medium pass
Cclescaffold_60173050.4 Steroid SQS/FDFT1 low borderline
Cclescaffold_80208680.1 Steroid SQS/FDFT1 high pass
Cclescaffold_80208680.2 Steroid SQS/FDFT1 high pass
Cclescaffold_80208680.3 Steroid SQS/FDFT1 high pass