PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_80211760.4 Steroid HYD1 medium pass
Cclescaffold_90233760.1 Steroid HYD1 high pass
Cclescaffold_30102580.1 Steroid ROT3/CYP90C1 medium borderline
Cclescaffold_50147760.1 Steroid ROT3/CYP90C1 low borderline
Cclescaffold_70181840.1 Steroid ROT3/CYP90C1 medium borderline
Cclescaffold_30066380.1 Steroid SMO1/SMO2 medium pass
Cclescaffold_80219750.1 Steroid SMO1/SMO2 medium pass
Cclescaffold_80219750.2 Steroid SMO1/SMO2 medium pass
Cclescaffold_80219750.3 Steroid SMO1/SMO2 medium pass
Cclescaffold_80219750.4 Steroid SMO1/SMO2 medium pass
Cclescaffold_10010210.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_10023640.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_10023640.2 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_10023640.3 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_10023780.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_10023780.2 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_20032090.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_20033850.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_20034010.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_20043500.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_20043500.2 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_20045530.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_20052500.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_30092890.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_30092890.2 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_40107960.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_40107970.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_40109700.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_40116530.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_40116530.2 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_40117760.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_40117760.2 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_40117850.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_40118380.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_40126030.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_40126030.2 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_40126360.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_40126670.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_50145580.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_50145590.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_50145600.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_50150370.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_50150370.2 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_50150370.3 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_50153390.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_50153400.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_50156180.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_60160390.1 Steroid SMT1/SMT2/SMT3 medium pass
Cclescaffold_60174070.1 Steroid SMT1/SMT2/SMT3 low borderline
Cclescaffold_60177010.1 Steroid SMT1/SMT2/SMT3 low borderline