PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_50154070.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_50155250.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_60167950.2 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_60168820.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_60168820.2 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_60172280.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_60172770.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_60173850.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_60176030.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_60176940.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_70182540.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_70182540.2 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_70183300.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70184500.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70184510.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70184520.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70196430.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70196490.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70197210.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70198880.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70199860.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70200100.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70200110.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_70200120.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80210120.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80210430.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80210530.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80210550.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80210580.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80210600.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80210880.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80210880.2 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80211200.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80215200.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_80219390.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_80221590.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_90240980.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_90242520.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_9350245300.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_40108530.1 Steroid DWF5 medium borderline
Cclescaffold_30067150.1 Steroid DWF7 low borderline
Cclescaffold_60175770.1 Steroid DWF7 medium pass
Cclescaffold_60172660.1 Steroid FK high pass
Cclescaffold_50140080.1 Steroid HYD1 high pass
Cclescaffold_80211750.1 Steroid HYD1 high pass
Cclescaffold_80211750.2 Steroid HYD1 medium pass
Cclescaffold_80211750.3 Steroid HYD1 medium pass
Cclescaffold_80211760.1 Steroid HYD1 high pass
Cclescaffold_80211760.2 Steroid HYD1 high pass
Cclescaffold_80211760.3 Steroid HYD1 high pass