PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Cclescaffold_40109740.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_40121910.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_50137490.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_50137560.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_50137720.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_50152630.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_50154930.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_50155010.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_70184270.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_70192660.1 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Cclescaffold_80201310.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_80201420.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_80204700.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_80205230.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_80208550.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_90239220.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_90239240.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_90239260.1 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Cclescaffold_10016720.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_20027740.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_20027760.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_20027790.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_20027800.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_20029210.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_20029660.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_30058360.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_30063150.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_30063180.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_30075610.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_30080470.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_40113830.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_40119810.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_50131710.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_50136660.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_50137800.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_50148480.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_70182060.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_90233590.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_90238900.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_90238910.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_90238920.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Cclescaffold_10006570.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Cclescaffold_10020780.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Cclescaffold_10021810.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Cclescaffold_10023720.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Cclescaffold_20030260.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Cclescaffold_20031090.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Cclescaffold_20031100.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Cclescaffold_20031120.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Cclescaffold_20031130.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC