PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_40111690.1 Alkaloid T3O medium pass
Cclescaffold_40111710.1 Alkaloid T3O medium pass
Cclescaffold_40111720.1 Alkaloid T3O medium pass
Cclescaffold_40113800.1 Alkaloid T3O medium borderline
Cclescaffold_40113810.1 Alkaloid T3O medium borderline
Cclescaffold_40113820.1 Alkaloid T3O medium borderline
Cclescaffold_40113830.1 Alkaloid T3O medium borderline
Cclescaffold_40113840.1 Alkaloid T3O medium borderline
Cclescaffold_40113850.1 Alkaloid T3O medium borderline
Cclescaffold_40114810.1 Alkaloid T3O medium pass
Cclescaffold_40117770.1 Alkaloid T3O medium pass
Cclescaffold_40120320.1 Alkaloid T3O medium borderline
Cclescaffold_40121010.1 Alkaloid T3O medium borderline
Cclescaffold_40121610.1 Alkaloid T3O medium borderline
Cclescaffold_40121970.1 Alkaloid T3O medium pass
Cclescaffold_40122060.1 Alkaloid T3O medium borderline
Cclescaffold_40122070.1 Alkaloid T3O medium borderline
Cclescaffold_50127930.1 Alkaloid T3O medium borderline
Cclescaffold_50130520.1 Alkaloid T3O medium borderline
Cclescaffold_50130540.1 Alkaloid T3O medium borderline
Cclescaffold_50131210.1 Alkaloid T3O medium borderline
Cclescaffold_50134510.1 Alkaloid T3O medium pass
Cclescaffold_50135760.1 Alkaloid T3O medium borderline
Cclescaffold_50137160.1 Alkaloid T3O medium borderline
Cclescaffold_50137800.1 Alkaloid T3O medium borderline
Cclescaffold_50138140.1 Alkaloid T3O medium borderline
Cclescaffold_50138440.1 Alkaloid T3O medium borderline
Cclescaffold_50138500.1 Alkaloid T3O medium borderline
Cclescaffold_50145020.1 Alkaloid T3O medium borderline
Cclescaffold_50145060.1 Alkaloid T3O medium borderline
Cclescaffold_50145070.1 Alkaloid T3O medium borderline
Cclescaffold_50147470.1 Alkaloid T3O medium borderline
Cclescaffold_50150330.1 Alkaloid T3O medium pass
Cclescaffold_50150990.1 Alkaloid T3O medium borderline
Cclescaffold_50152470.1 Alkaloid T3O medium borderline
Cclescaffold_50153640.1 Alkaloid T3O medium borderline
Cclescaffold_50153650.1 Alkaloid T3O medium borderline
Cclescaffold_50153700.1 Alkaloid T3O low borderline
Cclescaffold_50155250.1 Alkaloid T3O medium borderline
Cclescaffold_60159970.1 Alkaloid T3O medium pass
Cclescaffold_60159970.2 Alkaloid T3O medium pass
Cclescaffold_60159970.3 Alkaloid T3O low borderline
Cclescaffold_60167240.1 Alkaloid T3O medium borderline
Cclescaffold_60172270.1 Alkaloid T3O medium pass
Cclescaffold_60173790.1 Alkaloid T3O medium borderline
Cclescaffold_60173850.1 Alkaloid T3O low borderline
Cclescaffold_60176680.1 Alkaloid T3O medium pass
Cclescaffold_60176940.1 Alkaloid T3O medium pass
Cclescaffold_70181080.1 Alkaloid T3O medium pass
Cclescaffold_70181650.1 Alkaloid T3O medium borderline