PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_70181670.1 Alkaloid T3O medium pass
Cclescaffold_70181840.1 Alkaloid T3O medium pass
Cclescaffold_70182060.1 Alkaloid T3O medium pass
Cclescaffold_70183840.1 Alkaloid T3O medium pass
Cclescaffold_70184510.1 Alkaloid T3O medium borderline
Cclescaffold_70184520.1 Alkaloid T3O medium borderline
Cclescaffold_70188110.1 Alkaloid T3O medium pass
Cclescaffold_70188110.2 Alkaloid T3O medium pass
Cclescaffold_70188110.3 Alkaloid T3O medium pass
Cclescaffold_70189180.1 Alkaloid T3O medium borderline
Cclescaffold_70189190.1 Alkaloid T3O medium borderline
Cclescaffold_70189210.1 Alkaloid T3O medium borderline
Cclescaffold_70196430.1 Alkaloid T3O medium borderline
Cclescaffold_70196590.1 Alkaloid T3O medium borderline
Cclescaffold_70196600.1 Alkaloid T3O medium borderline
Cclescaffold_70196610.1 Alkaloid T3O medium borderline
Cclescaffold_70197130.1 Alkaloid T3O medium borderline
Cclescaffold_70197360.1 Alkaloid T3O medium borderline
Cclescaffold_70198860.1 Alkaloid T3O medium borderline
Cclescaffold_70198880.1 Alkaloid T3O medium borderline
Cclescaffold_70199250.1 Alkaloid T3O low borderline
Cclescaffold_70199810.1 Alkaloid T3O medium borderline
Cclescaffold_70199830.1 Alkaloid T3O medium borderline
Cclescaffold_70199850.1 Alkaloid T3O medium borderline
Cclescaffold_70199860.1 Alkaloid T3O medium borderline
Cclescaffold_70200100.1 Alkaloid T3O medium borderline
Cclescaffold_70200110.1 Alkaloid T3O medium borderline
Cclescaffold_70200120.1 Alkaloid T3O medium borderline
Cclescaffold_70200130.1 Alkaloid T3O medium borderline
Cclescaffold_80205690.1 Alkaloid T3O medium pass
Cclescaffold_80205690.2 Alkaloid T3O low borderline
Cclescaffold_80206570.1 Alkaloid T3O medium borderline
Cclescaffold_80206580.1 Alkaloid T3O medium borderline
Cclescaffold_80206600.1 Alkaloid T3O medium borderline
Cclescaffold_80208860.1 Alkaloid T3O medium borderline
Cclescaffold_80210120.1 Alkaloid T3O medium borderline
Cclescaffold_80210390.1 Alkaloid T3O medium borderline
Cclescaffold_80210430.1 Alkaloid T3O medium borderline
Cclescaffold_80210460.1 Alkaloid T3O medium borderline
Cclescaffold_80210470.1 Alkaloid T3O medium borderline
Cclescaffold_80210530.1 Alkaloid T3O medium borderline
Cclescaffold_80210540.1 Alkaloid T3O medium borderline
Cclescaffold_80210550.1 Alkaloid T3O medium borderline
Cclescaffold_80210580.1 Alkaloid T3O medium borderline
Cclescaffold_80210590.1 Alkaloid T3O medium borderline
Cclescaffold_80210600.1 Alkaloid T3O medium borderline
Cclescaffold_80210840.1 Alkaloid T3O medium borderline
Cclescaffold_80210870.1 Alkaloid T3O medium borderline
Cclescaffold_80210880.1 Alkaloid T3O medium borderline
Cclescaffold_80211200.1 Alkaloid T3O medium borderline