PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_70189180.1 Steroid CYP90D1 low borderline
Cclescaffold_70189190.1 Steroid CYP90D1 low borderline
Cclescaffold_70189210.1 Steroid CYP90D1 low borderline
Cclescaffold_70196450.1 Steroid CYP90D1 low borderline
Cclescaffold_70196590.1 Steroid CYP90D1 low borderline
Cclescaffold_70196600.1 Steroid CYP90D1 low borderline
Cclescaffold_70196610.1 Steroid CYP90D1 low borderline
Cclescaffold_70196730.1 Steroid CYP90D1 low borderline
Cclescaffold_70197130.1 Steroid CYP90D1 low borderline
Cclescaffold_70197310.1 Steroid CYP90D1 low borderline
Cclescaffold_70197360.1 Steroid CYP90D1 low borderline
Cclescaffold_80206570.1 Steroid CYP90D1 low borderline
Cclescaffold_80206580.1 Steroid CYP90D1 low borderline
Cclescaffold_80206600.1 Steroid CYP90D1 low borderline
Cclescaffold_80210390.1 Steroid CYP90D1 low borderline
Cclescaffold_80210460.1 Steroid CYP90D1 medium borderline
Cclescaffold_80210540.1 Steroid CYP90D1 low borderline
Cclescaffold_80210590.1 Steroid CYP90D1 low borderline
Cclescaffold_80210840.1 Steroid CYP90D1 low borderline
Cclescaffold_80210870.1 Steroid CYP90D1 low borderline
Cclescaffold_90238920.1 Steroid CYP90D1 low borderline
Cclescaffold_40106110.1 Steroid DET2 medium pass
Cclescaffold_60165180.1 Steroid DET2 medium pass
Cclescaffold_40117230.1 Steroid DWF1 medium pass
Cclescaffold_40117230.2 Steroid DWF1 medium pass
Cclescaffold_10006310.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_10016710.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_10016720.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_10019690.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20025940.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_20027670.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20027710.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20027780.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20027800.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_20027820.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20028030.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20029180.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20029210.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20029220.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20029660.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20031450.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20033840.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_20041860.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20041870.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20042650.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_20055460.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_270057780.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_270057790.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_270057800.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30060870.1 Steroid DWF4/CYP90B1 low borderline