PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_90240990.1 Terpenoid CYP76 medium borderline
Cclescaffold_90242520.1 Terpenoid CYP76 low borderline
Cclescaffold_9350245300.1 Terpenoid CYP76 medium borderline
Cclescaffold_10010090.1 Terpenoid DXR low borderline
Cclescaffold_30062290.1 Terpenoid DXR high pass
Cclescaffold_30062290.2 Terpenoid DXR high pass
Cclescaffold_30062290.3 Terpenoid DXR high pass
Cclescaffold_30062290.4 Terpenoid DXR high pass
Cclescaffold_30062310.1 Terpenoid DXR high pass
Cclescaffold_10002840.1 Terpenoid DXS medium pass
Cclescaffold_10002840.2 Terpenoid DXS medium pass
Cclescaffold_10022720.1 Terpenoid DXS medium pass
Cclescaffold_70186240.1 Terpenoid DXS medium pass
Cclescaffold_70186240.2 Terpenoid DXS medium pass
Cclescaffold_90225230.1 Terpenoid DXS medium pass
Cclescaffold_10017480.1 Terpenoid FPPS medium pass
Cclescaffold_10017480.2 Terpenoid FPPS medium pass
Cclescaffold_10017480.3 Terpenoid FPPS medium pass
Cclescaffold_30060460.1 Terpenoid FPPS medium pass
Cclescaffold_30091950.1 Terpenoid FPPS medium pass
Cclescaffold_60165790.1 Terpenoid FPPS medium pass
Cclescaffold_60172840.1 Terpenoid FPPS medium borderline
Cclescaffold_60174640.1 Terpenoid FPPS medium pass
Cclescaffold_70180040.1 Terpenoid FPPS low borderline
Cclescaffold_70180050.1 Terpenoid FPPS low borderline
Cclescaffold_80217460.1 Terpenoid FPPS medium pass
Cclescaffold_80220780.1 Terpenoid FPPS medium pass
Cclescaffold_10015620.1 Terpenoid GGPPS medium borderline
Cclescaffold_20050560.1 Terpenoid GGPPS medium borderline
Cclescaffold_20050560.2 Terpenoid GGPPS medium borderline
Cclescaffold_20050560.3 Terpenoid GGPPS medium borderline
Cclescaffold_20050560.4 Terpenoid GGPPS medium borderline
Cclescaffold_20050560.5 Terpenoid GGPPS medium borderline
Cclescaffold_20050570.1 Terpenoid GGPPS medium borderline
Cclescaffold_30080540.1 Terpenoid GGPPS medium borderline
Cclescaffold_30080540.2 Terpenoid GGPPS medium borderline
Cclescaffold_50131670.1 Terpenoid GGPPS medium borderline
Cclescaffold_50131700.1 Terpenoid GGPPS medium borderline
Cclescaffold_50131720.1 Terpenoid GGPPS medium borderline
Cclescaffold_60174680.1 Terpenoid GGPPS medium borderline
Cclescaffold_60174690.1 Terpenoid GGPPS medium borderline
Cclescaffold_60174700.1 Terpenoid GGPPS medium borderline
Cclescaffold_60174710.1 Terpenoid GGPPS medium borderline
Cclescaffold_70182890.1 Terpenoid GGPPS medium borderline
Cclescaffold_80202220.1 Terpenoid GGPPS medium borderline
Cclescaffold_80202250.1 Terpenoid GPPS low borderline
Cclescaffold_80206990.1 Terpenoid HDR/IspH high pass
Cclescaffold_80207020.1 Terpenoid HDR/IspH high pass
Cclescaffold_80207040.1 Terpenoid HDR/IspH high pass
Cclescaffold_80207050.1 Terpenoid HDR/IspH high pass