PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_80207050.2 Terpenoid HDR/IspH high pass
Cclescaffold_80217340.1 Terpenoid HDS/IspG high pass
Cclescaffold_80217340.2 Terpenoid HDS/IspG high pass
Cclescaffold_80217340.3 Terpenoid HDS/IspG high pass
Cclescaffold_50157300.1 Terpenoid HMGR medium pass
Cclescaffold_50157300.2 Terpenoid HMGR medium pass
Cclescaffold_80201300.1 Terpenoid HMGR medium pass
Cclescaffold_30066960.1 Terpenoid HMGS high pass
Cclescaffold_30066960.2 Terpenoid HMGS high pass
Cclescaffold_90241690.1 Terpenoid HMGS high pass
Cclescaffold_90241690.2 Terpenoid HMGS high pass
Cclescaffold_90241690.3 Terpenoid HMGS high pass
Cclescaffold_90241690.4 Terpenoid HMGS high pass
Cclescaffold_90241690.5 Terpenoid HMGS high pass
Cclescaffold_60160320.1 Terpenoid IDI medium pass
Cclescaffold_20048160.1 Terpenoid MCT/IspD low borderline
Cclescaffold_20048160.2 Terpenoid MCT/IspD low borderline
Cclescaffold_20048160.3 Terpenoid MCT/IspD low borderline
Cclescaffold_50128220.1 Terpenoid MCT/IspD high pass
Cclescaffold_50155340.1 Terpenoid MCT/IspD low borderline
Cclescaffold_30060010.1 Terpenoid MDS/IspF high pass
Cclescaffold_30060010.2 Terpenoid MDS/IspF high pass
Cclescaffold_70195450.1 Terpenoid MDS/IspF low borderline
Cclescaffold_20026800.1 Terpenoid MVD medium pass
Cclescaffold_20026800.2 Terpenoid MVD medium pass
Cclescaffold_20026840.1 Terpenoid MVD low borderline
Cclescaffold_20026840.2 Terpenoid MVD low borderline
Cclescaffold_70197030.1 Terpenoid MVD low borderline
Cclescaffold_30098150.1 Terpenoid MVK low borderline
Cclescaffold_50142920.1 Terpenoid MVK medium pass
Cclescaffold_50142920.2 Terpenoid MVK medium pass
Cclescaffold_50142920.3 Terpenoid MVK medium pass
Cclescaffold_50142920.4 Terpenoid MVK medium pass
Cclescaffold_80201350.1 Terpenoid MVK low borderline
Cclescaffold_90222810.1 Terpenoid MVK low borderline
Cclescaffold_90222810.2 Terpenoid MVK low borderline
Cclescaffold_50138230.1 Terpenoid PMK medium pass
Cclescaffold_50138230.2 Terpenoid PMK high pass
Cclescaffold_20037630.1 Terpenoid TPS medium pass
Cclescaffold_20039710.1 Terpenoid TPS medium pass
Cclescaffold_20051600.1 Terpenoid TPS medium pass
Cclescaffold_20051630.1 Terpenoid TPS medium pass
Cclescaffold_20051640.1 Terpenoid TPS medium pass
Cclescaffold_20051640.2 Terpenoid TPS medium pass
Cclescaffold_20052510.1 Terpenoid TPS medium pass
Cclescaffold_30070660.1 Terpenoid TPS medium pass
Cclescaffold_30093170.1 Terpenoid TPS medium pass
Cclescaffold_80213270.1 Terpenoid TPS medium pass
Cclescaffold_90234530.1 Terpenoid TPS medium pass
Cclescaffold_90244700.1 Terpenoid TPS medium pass