PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold86029_cov910238810.1 Terpenoid GGPPS medium borderline
Cretscaffold86029_cov910238840.1 Terpenoid GGPPS medium borderline
Cretscaffold8841_cov910276950.1 Terpenoid GGPPS medium borderline
Cretscaffold86001_cov870223880.1 Terpenoid HDR/IspH high pass
Cretscaffold86001_cov870223940.1 Terpenoid HDR/IspH high pass
Cretscaffold86001_cov870223980.1 Terpenoid HDR/IspH high pass
Cretscaffold514_cov870102460.1 Terpenoid HDS/IspG high pass
Cretscaffold514_cov870102460.2 Terpenoid HDS/IspG high pass
Cretscaffold514_cov870102460.3 Terpenoid HDS/IspG high pass
Cretscaffold86048_cov930254560.1 Terpenoid HMGR medium pass
Cretscaffold90_cov940285700.1 Terpenoid HMGR medium pass
Cretscaffold85899_cov890144910.1 Terpenoid HMGS high pass
Cretscaffold85924_cov870181470.1 Terpenoid HMGS high pass
Cretscaffold85924_cov870181470.2 Terpenoid HMGS high pass
Cretscaffold86066_cov840267430.1 Terpenoid IDI medium pass
Cretscaffold85923_cov900181410.1 Terpenoid MCT/IspD high pass
Cretscaffold85923_cov900181410.2 Terpenoid MCT/IspD high pass
Cretscaffold86048_cov930256460.1 Terpenoid MCT/IspD low borderline
Cretscaffold86048_cov930256460.3 Terpenoid MCT/IspD low borderline
Cretscaffold86048_cov930256460.6 Terpenoid MCT/IspD low borderline
Cretscaffold86035_cov920242990.1 Terpenoid MDS/IspF medium pass
Cretscaffold598_cov830113160.1 Terpenoid MVD medium pass
Cretscaffold85901_cov910146040.1 Terpenoid MVD low borderline
Cretscaffold85923_cov900175410.1 Terpenoid MVD low borderline
Cretscaffold86063_cov860265850.1 Terpenoid MVD low borderline
Cretscaffold39_cov910072110.1 Terpenoid MVK low borderline
Cretscaffold535_cov910107880.1 Terpenoid MVK medium pass
Cretscaffold535_cov910107880.2 Terpenoid MVK medium pass
Cretscaffold535_cov910107880.3 Terpenoid MVK medium pass
Cretscaffold535_cov910107880.4 Terpenoid MVK medium pass
Cretscaffold535_cov910107880.5 Terpenoid MVK medium pass
Cretscaffold86027_cov910235370.1 Terpenoid MVK low borderline
Cretscaffold90_cov940285740.1 Terpenoid MVK low borderline
Cretscaffold480_cov830092560.1 Terpenoid PMK medium pass
Cretscaffold85926_cov560189970.1 Terpenoid PMK low borderline
Cretscaffold1057_cov730004840.1 Terpenoid TPS medium pass
Cretscaffold11262_cov1100005470.1 Terpenoid TPS medium pass
Cretscaffold11262_cov1100005470.2 Terpenoid TPS medium pass
Cretscaffold11439_cov810010480.1 Terpenoid TPS medium pass
Cretscaffold11439_cov810010490.1 Terpenoid TPS medium pass
Cretscaffold11439_cov810010510.1 Terpenoid TPS medium pass
Cretscaffold13235_cov1500013540.1 Terpenoid TPS medium pass
Cretscaffold132_cov940015290.1 Terpenoid TPS medium pass
Cretscaffold13921_cov780020350.1 Terpenoid TPS medium pass
Cretscaffold144_cov710020820.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021210.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021270.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021280.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021290.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021300.1 Terpenoid TPS medium pass