PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold867_cov800275260.2 Alkaloid NMT low borderline
Cretscaffold867_cov800275260.3 Alkaloid NMT low borderline
Cretscaffold8881_cov860283980.1 Alkaloid NMT medium pass
Cretscaffold8881_cov860283980.2 Alkaloid NMT medium pass
Cretscaffold11345_cov920008330.1 Alkaloid ODC low borderline
Cretscaffold4078_cov810077170.1 Alkaloid ODC low borderline
Cretscaffold4078_cov810077180.1 Alkaloid ODC medium pass
Cretscaffold4078_cov810077210.1 Alkaloid ODC medium pass
Cretscaffold480_cov830093180.1 Alkaloid ODC medium pass
Cretscaffold1027_cov900002750.1 Alkaloid PMT medium pass
Cretscaffold1027_cov900002760.1 Alkaloid PMT low borderline
Cretscaffold1027_cov900002780.1 Alkaloid PMT low borderline
Cretscaffold1027_cov900002810.1 Alkaloid PMT medium pass
Cretscaffold1027_cov900002820.1 Alkaloid PMT medium pass
Cretscaffold1027_cov900002830.1 Alkaloid PMT medium pass
Cretscaffold1027_cov900002840.1 Alkaloid PMT low borderline
Cretscaffold1186_cov860011220.1 Alkaloid PMT medium pass
Cretscaffold22_cov910036790.1 Alkaloid PMT low borderline
Cretscaffold2964_cov920054600.1 Alkaloid PMT medium borderline
Cretscaffold429_cov910086490.1 Alkaloid PMT low borderline
Cretscaffold5933_cov910112060.1 Alkaloid PMT medium pass
Cretscaffold81895_cov1410124120.1 Alkaloid PMT medium pass
Cretscaffold82664_cov1420125580.1 Alkaloid PMT low borderline
Cretscaffold85880_cov810141260.2 Alkaloid PMT low borderline
Cretscaffold85880_cov810141260.5 Alkaloid PMT low borderline
Cretscaffold85940_cov860200390.1 Alkaloid PMT low borderline
Cretscaffold85940_cov860200390.2 Alkaloid PMT low borderline
Cretscaffold85973_cov870212540.1 Alkaloid PMT medium pass
Cretscaffold85973_cov870212540.2 Alkaloid PMT medium pass
Cretscaffold86026_cov920228150.1 Alkaloid PMT medium pass
Cretscaffold86026_cov920228150.2 Alkaloid PMT medium pass
Cretscaffold86026_cov920228150.3 Alkaloid PMT medium pass
Cretscaffold86027_cov910236520.1 Alkaloid PMT medium pass
Cretscaffold86027_cov910238550.1 Alkaloid PMT medium pass
Cretscaffold86030_cov920240390.1 Alkaloid PMT low borderline
Cretscaffold86035_cov920241010.1 Alkaloid PMT medium borderline
Cretscaffold86048_cov930257070.1 Alkaloid PMT low borderline
Cretscaffold86061_cov890263270.1 Alkaloid PMT medium borderline
Cretscaffold86061_cov890263270.2 Alkaloid PMT medium borderline
Cretscaffold86062_cov850264570.1 Alkaloid PMT medium pass
Cretscaffold86063_cov860265420.1 Alkaloid PMT low borderline
Cretscaffold11345_cov920009690.1 Alkaloid PYKS low borderline
Cretscaffold18765_cov1340030140.1 Alkaloid PYKS medium pass
Cretscaffold2179_cov930033290.1 Alkaloid PYKS low borderline
Cretscaffold2179_cov930033290.2 Alkaloid PYKS low borderline
Cretscaffold294_cov920050200.1 Alkaloid PYKS low borderline
Cretscaffold294_cov920051680.1 Alkaloid PYKS low borderline
Cretscaffold2964_cov920053590.1 Alkaloid PYKS high pass
Cretscaffold3776_cov870065100.1 Alkaloid PYKS low borderline
Cretscaffold397_cov790067930.1 Alkaloid PYKS high pass