PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold85923_cov900181290.2 Flavonoid ANR medium borderline
Cretscaffold85938_cov950196870.1 Flavonoid ANR low borderline
Cretscaffold85995_cov800222900.1 Flavonoid ANR medium borderline
Cretscaffold86027_cov910232630.1 Flavonoid ANR low borderline
Cretscaffold86027_cov910232640.1 Flavonoid ANR medium borderline
Cretscaffold86048_cov930254580.1 Flavonoid ANR low borderline
Cretscaffold86048_cov930257210.1 Flavonoid ANR medium borderline
Cretscaffold86048_cov930258540.1 Flavonoid ANR medium pass
Cretscaffold86048_cov930258540.2 Flavonoid ANR low borderline
Cretscaffold86048_cov930258540.3 Flavonoid ANR medium pass
Cretscaffold86048_cov930258540.4 Flavonoid ANR low borderline
Cretscaffold86063_cov860265150.1 Flavonoid ANR medium borderline
Cretscaffold90_cov940285580.1 Flavonoid ANR medium borderline
Cretscaffold146_cov780021890.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold146_cov780021910.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold26063_cov960039360.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold440_cov850088330.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold46437_cov810091590.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold50020_cov620098480.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold85912_cov810160690.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold85912_cov810160790.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold85918_cov900171500.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold85935_cov930195700.1 Flavonoid ANS/LDOX medium pass
Cretscaffold86027_cov910236920.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold1027_cov900004390.1 Flavonoid C4H low borderline
Cretscaffold11345_cov920007940.1 Flavonoid C4H medium borderline
Cretscaffold2964_cov920055770.1 Flavonoid C4H low borderline
Cretscaffold2964_cov920058030.1 Flavonoid C4H medium borderline
Cretscaffold480_cov830093220.1 Flavonoid C4H medium borderline
Cretscaffold849_cov840135650.1 Flavonoid C4H medium borderline
Cretscaffold85995_cov800222460.1 Flavonoid C4H low borderline
Cretscaffold86030_cov920239650.1 Flavonoid C4H medium borderline
Cretscaffold86048_cov930259800.1 Flavonoid C4H low borderline
Cretscaffold294_cov920051550.1 Flavonoid CHI low borderline
Cretscaffold294_cov920051550.2 Flavonoid CHI low borderline
Cretscaffold294_cov920051550.3 Flavonoid CHI low borderline
Cretscaffold294_cov920051550.4 Flavonoid CHI low borderline
Cretscaffold294_cov920051550.5 Flavonoid CHI low borderline
Cretscaffold85938_cov950197520.1 Flavonoid CHI medium pass
Cretscaffold86030_cov920239720.1 Flavonoid CHI medium pass
Cretscaffold86030_cov920239720.2 Flavonoid CHI medium pass
Cretscaffold86030_cov920239720.3 Flavonoid CHI medium pass
Cretscaffold86030_cov920239720.4 Flavonoid CHI medium pass
Cretscaffold86082_cov970273200.1 Flavonoid CHI low borderline
Cretscaffold18765_cov1340030140.1 Flavonoid CHS medium pass
Cretscaffold2964_cov920053590.1 Flavonoid CHS medium pass
Cretscaffold397_cov790067930.1 Flavonoid CHS medium pass
Cretscaffold4658_cov1140091720.1 Flavonoid CHS medium pass
Cretscaffold5933_cov910112130.1 Flavonoid CHS medium pass
Cretscaffold5933_cov910112160.1 Flavonoid CHS medium pass