PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold86026_cov920228570.1 Phenylpropanoid CAD low borderline
Cretscaffold86026_cov920228570.2 Phenylpropanoid CAD medium borderline
Cretscaffold86030_cov920240120.1 Phenylpropanoid CAD low borderline
Cretscaffold86040_cov830245020.1 Phenylpropanoid CAD low borderline
Cretscaffold86040_cov830245710.1 Phenylpropanoid CAD low borderline
Cretscaffold86040_cov830245730.1 Phenylpropanoid CAD low borderline
Cretscaffold86041_cov890246790.1 Phenylpropanoid CAD medium pass
Cretscaffold86041_cov890246790.2 Phenylpropanoid CAD medium pass
Cretscaffold86041_cov890247640.1 Phenylpropanoid CAD low borderline
Cretscaffold86041_cov890247660.1 Phenylpropanoid CAD low borderline
Cretscaffold86041_cov890247670.1 Phenylpropanoid CAD low borderline
Cretscaffold86043_cov840253460.1 Phenylpropanoid CAD low borderline
Cretscaffold86048_cov930255820.1 Phenylpropanoid CAD medium pass
Cretscaffold86048_cov930257210.1 Phenylpropanoid CAD medium borderline
Cretscaffold86061_cov890263770.1 Phenylpropanoid CAD medium pass
Cretscaffold86061_cov890263770.2 Phenylpropanoid CAD low borderline
Cretscaffold86080_cov890272330.1 Phenylpropanoid CAD low borderline
Cretscaffold86085_cov560273500.1 Phenylpropanoid CAD low borderline
Cretscaffold86326_cov2060274500.1 Phenylpropanoid CAD medium pass
Cretscaffold90_cov940285580.1 Phenylpropanoid CAD medium borderline
Cretscaffold11345_cov920006840.1 Phenylpropanoid CCR medium borderline
Cretscaffold1382_cov810019810.1 Phenylpropanoid CCR low borderline
Cretscaffold294_cov920051640.1 Phenylpropanoid CCR low borderline
Cretscaffold39867_cov680068560.1 Phenylpropanoid CCR medium borderline
Cretscaffold81160_cov1070122790.1 Phenylpropanoid CCR medium pass
Cretscaffold85899_cov890144170.1 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181100.1 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181100.2 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181100.3 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181100.4 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181290.1 Phenylpropanoid CCR medium borderline
Cretscaffold85923_cov900181290.2 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000190980.1 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000190990.1 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000190990.2 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000190990.3 Phenylpropanoid CCR medium borderline
Cretscaffold85928_cov1000191020.1 Phenylpropanoid CCR medium borderline
Cretscaffold85938_cov950196870.1 Phenylpropanoid CCR medium pass
Cretscaffold85973_cov870214130.1 Phenylpropanoid CCR low borderline
Cretscaffold85995_cov800222900.1 Phenylpropanoid CCR medium pass
Cretscaffold86027_cov910232640.1 Phenylpropanoid CCR medium borderline
Cretscaffold86040_cov830245570.1 Phenylpropanoid CCR low borderline
Cretscaffold86040_cov830245570.2 Phenylpropanoid CCR low borderline
Cretscaffold86042_cov890248370.1 Phenylpropanoid CCR low borderline
Cretscaffold86042_cov890248370.2 Phenylpropanoid CCR low borderline
Cretscaffold86042_cov890248370.5 Phenylpropanoid CCR low borderline
Cretscaffold86061_cov890263820.1 Phenylpropanoid CCR low borderline
Cretscaffold86063_cov860265150.1 Phenylpropanoid CCR medium borderline
Cretscaffold86063_cov860265150.2 Phenylpropanoid CCR medium borderline
Cretscaffold19103_cov650030510.1 Phenylpropanoid CCoAOMT medium pass