PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold89943_cov2690285250.1 Steroid SMT1/SMT2/SMT3 medium pass
Cretscaffold9544_cov1300287280.1 Steroid SMT1/SMT2/SMT3 medium pass
Cretscaffold18271_cov590028290.1 Steroid SQE medium pass
Cretscaffold24482_cov1080038590.1 Steroid SQE medium pass
Cretscaffold29366_cov1380049660.1 Steroid SQE medium pass
Cretscaffold294_cov920050070.1 Steroid SQE medium pass
Cretscaffold294_cov920050080.1 Steroid SQE medium pass
Cretscaffold39_cov910074620.1 Steroid SQE medium pass
Cretscaffold429_cov910082780.1 Steroid SQE medium pass
Cretscaffold543_cov950108500.1 Steroid SQE medium pass
Cretscaffold543_cov950108510.1 Steroid SQE medium pass
Cretscaffold80818_cov1250122440.1 Steroid SQE medium pass
Cretscaffold82234_cov1060124540.1 Steroid SQE medium pass
Cretscaffold83522_cov1450129420.1 Steroid SQE medium pass
Cretscaffold8841_cov910280320.1 Steroid SQE medium pass
Cretscaffold8841_cov910280320.2 Steroid SQE medium pass
Cretscaffold8841_cov910280320.3 Steroid SQE medium pass
Cretscaffold884_cov800283210.1 Steroid SQE low borderline
Cretscaffold132_cov940014960.1 Steroid SQS/FDFT1 low borderline
Cretscaffold273_cov940041340.1 Steroid SQS/FDFT1 high pass
Cretscaffold4070_cov900076950.1 Steroid SQS/FDFT1 medium pass
Cretscaffold4070_cov900076950.2 Steroid SQS/FDFT1 medium pass
Cretscaffold4070_cov900077000.1 Steroid SQS/FDFT1 low borderline
Cretscaffold4070_cov900077020.1 Steroid SQS/FDFT1 medium pass
Cretscaffold85909_cov900155460.1 Steroid SQS/FDFT1 medium pass
Cretscaffold85909_cov900155460.2 Steroid SQS/FDFT1 medium pass
Cretscaffold86027_cov910230150.1 Steroid SQS/FDFT1 low borderline
Cretscaffold86027_cov910230150.2 Steroid SQS/FDFT1 low borderline
Cretscaffold11980_cov890011950.1 Terpenoid AACT low borderline
Cretscaffold132_cov940017810.1 Terpenoid AACT low borderline
Cretscaffold132_cov940017810.2 Terpenoid AACT low borderline
Cretscaffold132_cov940017810.3 Terpenoid AACT low borderline
Cretscaffold22_cov910036060.1 Terpenoid AACT low borderline
Cretscaffold22_cov910036060.2 Terpenoid AACT low borderline
Cretscaffold521_cov930106050.1 Terpenoid AACT medium borderline
Cretscaffold82373_cov750124790.1 Terpenoid AACT medium borderline
Cretscaffold85905_cov920147980.1 Terpenoid AACT medium borderline
Cretscaffold85918_cov900173120.1 Terpenoid AACT medium borderline
Cretscaffold85918_cov900173120.2 Terpenoid AACT medium borderline
Cretscaffold85918_cov900173120.3 Terpenoid AACT medium borderline
Cretscaffold85918_cov900173120.4 Terpenoid AACT medium borderline
Cretscaffold86026_cov920227410.1 Terpenoid AACT low borderline
Cretscaffold1027_cov900000740.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900001880.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002750.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002760.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002780.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002790.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002810.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002820.1 Terpenoid BAHD medium pass