PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
CLame665600147410 Phenylpropanoid C3'H/CYP98A medium borderline
CLame665930153210 Phenylpropanoid C3'H/CYP98A medium borderline
CLame666000154620 Phenylpropanoid C3'H/CYP98A low borderline
CLame666000154680 Phenylpropanoid C3'H/CYP98A low borderline
CLame666030155380 Phenylpropanoid C3'H/CYP98A low borderline
CLame666330161280 Phenylpropanoid C3'H/CYP98A low borderline
CLame666330161300 Phenylpropanoid C3'H/CYP98A low borderline
CLame666330161340 Phenylpropanoid C3'H/CYP98A low borderline
CLame666410163430 Phenylpropanoid C3'H/CYP98A medium borderline
CLame666430164060 Phenylpropanoid C3'H/CYP98A medium borderline
CLame666540166540 Phenylpropanoid C3'H/CYP98A low borderline
CLame666890173770 Phenylpropanoid C3'H/CYP98A low borderline
CLame667040178430 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667070178780 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667200182760 Phenylpropanoid C3'H/CYP98A low borderline
CLame667310185680 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667450189310 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667550192540 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667550192560 Phenylpropanoid C3'H/CYP98A medium borderline
CLame667630194730 Phenylpropanoid C3'H/CYP98A low borderline
CLame667750198670 Phenylpropanoid C3'H/CYP98A low borderline
CLame667760199100 Phenylpropanoid C3'H/CYP98A low borderline
CLame667830200970 Phenylpropanoid C3'H/CYP98A low borderline
CLame667830201000 Phenylpropanoid C3'H/CYP98A low borderline
CLame667840201780 Phenylpropanoid C3'H/CYP98A low borderline
CLame667920203800 Phenylpropanoid C3'H/CYP98A low borderline
CLame667990205480 Phenylpropanoid C3'H/CYP98A low borderline
CLame668030206150 Phenylpropanoid C3'H/CYP98A low borderline
CLame668030206170 Phenylpropanoid C3'H/CYP98A low borderline
CLame668120208660 Phenylpropanoid C3'H/CYP98A medium borderline
CLame668500221090 Phenylpropanoid C3'H/CYP98A low borderline
CLame668620224760 Phenylpropanoid C3'H/CYP98A low borderline
CLame668620224770 Phenylpropanoid C3'H/CYP98A low borderline
CLame668950231390 Phenylpropanoid C3'H/CYP98A low borderline
CLame669030233770 Phenylpropanoid C3'H/CYP98A low borderline
CLame669180235460 Phenylpropanoid C3'H/CYP98A low borderline
CLame669180235510 Phenylpropanoid C3'H/CYP98A low borderline
CLame670410239260 Phenylpropanoid C3'H/CYP98A low borderline