PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.7% Terpenoid pathway 23.92% Alkaloid pathway 18.36% Flavonoid pathway 13.58% Rosmarinic acid pathway 11.27% Steroid pathway 6.17%
Family Distribution
C4H 6.6% POD 6.17% C3'H/CYP98A 5.38% BAHD 5.38% 4CL 4.77% CYP76 3.79% NMT 3.3% IFS 3.3%
Other Families 61.31%
More Families (94)
PAL 51 3.12% F3H 42 2.57% STR 39 2.38% IFR 37 2.26% BR6OX2/CYP85A2 36 2.2% F3'H/CYP75B 33 2.02% UGT 33 2.02% GS 32 1.96% T3O 31 1.89% DWF4/CYP90B1 31 1.89% UFGT 30 1.83% IO 28 1.71% 7DLGT 28 1.71% CODM/T6ODM 26 1.59% PYKS 26 1.59% CAD 23 1.41% SMT1/SMT2/SMT3 20 1.22% CAS 20 1.22% H6H 17 1.04% TRI/TRII 17 1.04% CYP71 17 1.04% SLS 16 0.98% CHS 16 0.98% CYP90D1 16 0.98% G8O/G8H 15 0.92% CSE 15 0.92% F3'5'H/CYP75A 14 0.86% 7DLH 13 0.79% COMT 13 0.79% NCS 12 0.73% RAS 11 0.67% CPD/CYP90A1 11 0.67% SGD 10 0.61% HCT 10 0.61% LAMT 9 0.55% 16OMT 9 0.55% LAC 9 0.55% 8HGO 8 0.49% F5H/CYP84A 8 0.49% COR 7 0.43% ANR 7 0.43% SQS/FDFT1 7 0.43% BBE 6 0.37% T16H 6 0.37% CNMT 5 0.31% TDC 5 0.31% MPO 5 0.31% PMT 5 0.31% FNS 5 0.31% CCR 5 0.31% CPR 5 0.31% BR6OX1/CYP85A1 5 0.31% DWF5 5 0.31% AACT 5 0.31% CHI 4 0.24% DET2 4 0.24% GGPPS 4 0.24% FPPS 4 0.24% TPS 4 0.24% MVD 4 0.24% GES 3 0.18% TYDC_DDC 3 0.18% ADC 3 0.18% FLS 3 0.18% DFR 3 0.18% TAT 3 0.18% ROT3/CYP90C1 3 0.18% SQE 3 0.18% SMO1/SMO2 3 0.18% MVK 3 0.18% HDS/IspG 3 0.18% MDS/IspF 3 0.18% 6OMT_4OMT_SOMT 2 0.12% CYP719 2 0.12% CCoAOMT 2 0.12% CYP51G1 2 0.12% HMGS 2 0.12% MCT/IspD 2 0.12% ISY 1 0.06% CYP80B1 1 0.06% ANS/LDOX 1 0.06% HPPR 1 0.06% HYD1 1 0.06% FK 1 0.06% CPI1 1 0.06% DWF7 1 0.06% DWF1 1 0.06% HDR/IspH 1 0.06% CMK/IspE 1 0.06% PMK 1 0.06% DXR 1 0.06% DXS 1 0.06% HMGR 1 0.06% IDI 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
CLame667040178430 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
CLame667070178780 Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
CLame667200182760 Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
CLame667310185680 Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
CLame667450189310 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
CLame667510190550 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
CLame667550192540 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
CLame667550192560 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
CLame668110207810 Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
CLame668120208660 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
CLame669080234670 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
CLame670450239570 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO