Climacium americanum (climacium_americanum)
Imported from atlas release summary for Climacium americanum.
648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
648
Candidate Genes
C4H
6.6%
POD
6.17%
C3'H/CYP98A
5.38%
BAHD
5.38%
4CL
4.77%
CYP76
3.79%
NMT
3.3%
IFS
3.3%
Other Families
61.31%
More Families (94)
PAL
51
3.12%
F3H
42
2.57%
STR
39
2.38%
IFR
37
2.26%
BR6OX2/CYP85A2
36
2.2%
F3'H/CYP75B
33
2.02%
UGT
33
2.02%
GS
32
1.96%
T3O
31
1.89%
DWF4/CYP90B1
31
1.89%
UFGT
30
1.83%
IO
28
1.71%
7DLGT
28
1.71%
CODM/T6ODM
26
1.59%
PYKS
26
1.59%
CAD
23
1.41%
SMT1/SMT2/SMT3
20
1.22%
CAS
20
1.22%
H6H
17
1.04%
TRI/TRII
17
1.04%
CYP71
17
1.04%
SLS
16
0.98%
CHS
16
0.98%
CYP90D1
16
0.98%
G8O/G8H
15
0.92%
CSE
15
0.92%
F3'5'H/CYP75A
14
0.86%
7DLH
13
0.79%
COMT
13
0.79%
NCS
12
0.73%
RAS
11
0.67%
CPD/CYP90A1
11
0.67%
SGD
10
0.61%
HCT
10
0.61%
LAMT
9
0.55%
16OMT
9
0.55%
LAC
9
0.55%
8HGO
8
0.49%
F5H/CYP84A
8
0.49%
COR
7
0.43%
ANR
7
0.43%
SQS/FDFT1
7
0.43%
BBE
6
0.37%
T16H
6
0.37%
CNMT
5
0.31%
TDC
5
0.31%
MPO
5
0.31%
PMT
5
0.31%
FNS
5
0.31%
CCR
5
0.31%
CPR
5
0.31%
BR6OX1/CYP85A1
5
0.31%
DWF5
5
0.31%
AACT
5
0.31%
CHI
4
0.24%
DET2
4
0.24%
GGPPS
4
0.24%
FPPS
4
0.24%
TPS
4
0.24%
MVD
4
0.24%
GES
3
0.18%
TYDC_DDC
3
0.18%
ADC
3
0.18%
FLS
3
0.18%
DFR
3
0.18%
TAT
3
0.18%
ROT3/CYP90C1
3
0.18%
SQE
3
0.18%
SMO1/SMO2
3
0.18%
MVK
3
0.18%
HDS/IspG
3
0.18%
MDS/IspF
3
0.18%
6OMT_4OMT_SOMT
2
0.12%
CYP719
2
0.12%
CCoAOMT
2
0.12%
CYP51G1
2
0.12%
HMGS
2
0.12%
MCT/IspD
2
0.12%
ISY
1
0.06%
CYP80B1
1
0.06%
ANS/LDOX
1
0.06%
HPPR
1
0.06%
HYD1
1
0.06%
FK
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
HDR/IspH
1
0.06%
CMK/IspE
1
0.06%
PMK
1
0.06%
DXR
1
0.06%
DXS
1
0.06%
HMGR
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 173 | 10 | POD (95) | View species results |
| Terpenoid pathway | 155 | 19 | BAHD (57) | View species results |
| Alkaloid pathway | 119 | 18 | NMT (27) | View species results |
| Flavonoid pathway | 88 | 8 | UFGT (28) | View species results |
| Rosmarinic acid pathway | 73 | 7 | C4H (30) | View species results |
| Steroid pathway | 40 | 12 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 600 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 109 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CLame533320006770 | Alkaloid | NMT | medium | pass | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| CLame587700010620 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| CLame650680031530 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| CLame656020049720 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| CLame656020049730 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| CLame656090050180 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| CLame658120061280 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| CLame659010067940 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| CLame659650072820 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| CLame660310078630 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| CLame661940094080 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| CLame662130096820 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| CLame662540101370 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| CLame663100108710 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| CLame663350111890 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| CLame663400112660 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| CLame663590114990 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| CLame663610115070 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| CLame663800118120 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| CLame664120121210 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| CLame664690128880 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| CLame665010135270 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| CLame665010135280 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| CLame665170138780 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| CLame665570147170 | Alkaloid | NMT | medium | pass | NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ |
| CLame665600147420 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| CLame665950153710 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| CLame666000154570 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| CLame666030155480 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| CLame666620167750 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| CLame666870173330 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| CLame666890173850 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| CLame666960175860 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| CLame667070178910 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| CLame667070179170 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| CLame667180182030 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| CLame667280185050 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| CLame667720197490 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| CLame667800199980 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| CLame668030206610 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| CLame668160210370 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| CLame668220211690 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| CLame668280213520 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| CLame668340215540 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| CLame668460219510 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| CLame668500220660 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| CLame668590224390 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| CLame668640225350 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| CLame669000232660 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| CLame669030233490 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |