PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
CLame618030014580 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame635670017540 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame644640022200 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame644640022220 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame648320026490 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
CLame648650027290 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame649250028490 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame654390042100 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame655780048710 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame656810053510 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame658050061090 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
CLame660170077600 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame660760082670 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame661330087710 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame666570166860 Flavonoid PAL low borderline PAL__00004__sp_P45725_PAL3_ARATH
CLame667280185020 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
CLame670680240790 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame618030014580 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame635670017540 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame644640022200 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame644640022220 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame648320026490 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
CLame648650027290 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame649250028490 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame654390042100 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame655780048710 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame656810053510 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame658050061090 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
CLame660170077600 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame660760082670 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame661330087710 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame666570166860 Phenylpropanoid PAL low borderline PAL__00004__sp_P45725_PAL3_ARATH
CLame667280185020 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
CLame670680240790 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame618030014580 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame635670017540 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame644640022200 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame644640022220 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame648320026490 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
CLame648650027290 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame649250028490 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame654390042100 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame655780048710 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame656810053510 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame658050061090 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
CLame660170077600 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame660760082670 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame661330087710 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
CLame666570166860 Rosmarinic Acid PAL low borderline PAL__00004__sp_P45725_PAL3_ARATH
CLame667280185020 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR