PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Gene Pathway Family Confidence Status
CLame663800118120 Alkaloid NMT low borderline
CLame664120121210 Alkaloid NMT low borderline
CLame664690128880 Alkaloid NMT low borderline
CLame665010135270 Alkaloid NMT low borderline
CLame665010135280 Alkaloid NMT low borderline
CLame665170138780 Alkaloid NMT medium borderline
CLame665570147170 Alkaloid NMT medium pass
CLame665600147420 Alkaloid NMT low borderline
CLame665950153710 Alkaloid NMT low borderline
CLame666000154570 Alkaloid NMT medium pass
CLame666030155480 Alkaloid NMT medium pass
CLame666620167750 Alkaloid NMT medium pass
CLame666870173330 Alkaloid NMT medium pass
CLame666890173850 Alkaloid NMT low borderline
CLame666960175860 Alkaloid NMT low borderline
CLame667070178910 Alkaloid NMT medium pass
CLame667070179170 Alkaloid NMT medium pass
CLame667180182030 Alkaloid NMT low borderline
CLame667280185050 Alkaloid NMT medium pass
CLame667720197490 Alkaloid NMT medium pass
CLame667800199980 Alkaloid NMT medium pass
CLame668030206610 Alkaloid NMT low borderline
CLame668160210370 Alkaloid NMT low borderline
CLame668220211690 Alkaloid NMT medium pass
CLame668280213520 Alkaloid NMT medium borderline
CLame668340215540 Alkaloid NMT medium pass
CLame668460219510 Alkaloid NMT medium pass
CLame668500220660 Alkaloid NMT medium pass
CLame668590224390 Alkaloid NMT medium pass
CLame668640225350 Alkaloid NMT low borderline
CLame669000232660 Alkaloid NMT medium borderline
CLame669030233490 Alkaloid NMT medium borderline
CLame669180235450 Alkaloid NMT medium pass
CLame670050238960 Alkaloid NMT low borderline
CLame670200239010 Alkaloid NMT low borderline
CLame670240239150 Alkaloid NMT medium borderline
CLame652890036880 Alkaloid PMT medium pass
CLame660620081240 Alkaloid PMT medium borderline
CLame664120121270 Alkaloid PMT medium pass
CLame665720148640 Alkaloid PMT low borderline
CLame666900174010 Alkaloid PMT medium pass
CLame635670017530 Alkaloid PYKS high pass
CLame640360018990 Alkaloid PYKS high pass
CLame647380025560 Alkaloid PYKS medium pass
CLame653810039790 Alkaloid PYKS high pass
CLame654390042080 Alkaloid PYKS high pass
CLame655780048690 Alkaloid PYKS high pass
CLame656890054430 Alkaloid PYKS low borderline
CLame657480057310 Alkaloid PYKS low borderline
CLame658380063330 Alkaloid PYKS high pass